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The map label for this gene is rnfB [H]

Identifier: 85857985

GI number: 85857985

Start: 146694

End: 147557

Strand: Direct

Name: rnfB [H]

Synonym: SYN_00628

Alternate gene names: 85857985

Gene position: 146694-147557 (Clockwise)

Preceding gene: 85857981

Following gene: 85857996

Centisome position: 4.61

GC content: 53.82

Gene sequence:

>864_bases
ATGGATCCAGTATTGGTTAAATTGGCACTCGGAGGAATCGCATTCCTCGTCTGCATCGGACTTTTATTCGGCATTGGGCT
GGCATTGGCCGCACAGAAATTCGCTGTCGAAACCAATCCAAAGGTGGAGGAAGTGCTTGAAGTTCTTGCCGGAGCACAGT
GTGGTGGATGCGGTTACGCAGGTTGTGAAGGGTATGCAGAAGCGGTTGTTAACGATCCGGAGGTGTCCCCCAATCTCTGT
TTTCCCGGCAAGGCTGCGGTAGCGGAAGCTGTTGCGGAAATTACCGGGAAAAAGTTATCCGGCGCCGCCAACATGGTCGC
TGCAGTAAGATGCTCCCGCATCGAGGGAAAAGTTGGACAGAAATACAAGTATCTCGGTTATCAGACCTGTGCGGGTGCGA
ACCTTGCCTTCGGTGGGCCACAGGAATGTGCATACGCCTGCCTCGGTTTCGGGGACTGCGTTGCGGCTTGCCCATTTGGG
GCCATTACCCTGGATAATTCCTTTCCAGTCATCGATGTTGAGAAGTGTGTGGGCTGCGGCTCCTGCGTGCGAACATGTCC
AAAGAATGTCATTGAAATCACTCCCTCAAGCGCTCGCGTCTGGGTGCCCTGCAGCACAAAGGATCCCGGGAAGGCGGTGC
GGTCTGTGTGCGAGGTGGGATGCATAACCTGCAAGATGTGTATCAAAGCCTGTCCGGCAGGAGCTGTGAGGGTAGAGGGC
GATCTCATCCGCATTGATCACAAGAAATGCGCAGATTACGGTGTGGAGTGCAAAGAAATCTGCGTTGAGAAGTGCCCGCG
GAATATTTTCAGGCCGTTTGAGGCAGCAGTAAAAAAGGCTGAACAAGTTGAGGCGGTAGCTTGA

Upstream 100 bases:

>100_bases
AAATATGTTATATATGGAGTGCGGTATCGAGATATTGATTTCAGGCATGCTTTTCCGGAATCGCTGTTTTTAAAAAATCT
GTATTGATTGAGGTAAAACA

Downstream 100 bases:

>100_bases
CAATTCCATATCATTCCACCCCTTCTAAAGAGACGGACAAGAAGGAGAGAATATGGGATCTGACAAAGTAGAAACATGCG
CCTCTGGGAAACTCACCGCA

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MDPVLVKLALGGIAFLVCIGLLFGIGLALAAQKFAVETNPKVEEVLEVLAGAQCGGCGYAGCEGYAEAVVNDPEVSPNLC
FPGKAAVAEAVAEITGKKLSGAANMVAAVRCSRIEGKVGQKYKYLGYQTCAGANLAFGGPQECAYACLGFGDCVAACPFG
AITLDNSFPVIDVEKCVGCGSCVRTCPKNVIEITPSSARVWVPCSTKDPGKAVRSVCEVGCITCKMCIKACPAGAVRVEG
DLIRIDHKKCADYGVECKEICVEKCPRNIFRPFEAAVKKAEQVEAVA

Sequences:

>Translated_287_residues
MDPVLVKLALGGIAFLVCIGLLFGIGLALAAQKFAVETNPKVEEVLEVLAGAQCGGCGYAGCEGYAEAVVNDPEVSPNLC
FPGKAAVAEAVAEITGKKLSGAANMVAAVRCSRIEGKVGQKYKYLGYQTCAGANLAFGGPQECAYACLGFGDCVAACPFG
AITLDNSFPVIDVEKCVGCGSCVRTCPKNVIEITPSSARVWVPCSTKDPGKAVRSVCEVGCITCKMCIKACPAGAVRVEG
DLIRIDHKKCADYGVECKEICVEKCPRNIFRPFEAAVKKAEQVEAVA
>Mature_287_residues
MDPVLVKLALGGIAFLVCIGLLFGIGLALAAQKFAVETNPKVEEVLEVLAGAQCGGCGYAGCEGYAEAVVNDPEVSPNLC
FPGKAAVAEAVAEITGKKLSGAANMVAAVRCSRIEGKVGQKYKYLGYQTCAGANLAFGGPQECAYACLGFGDCVAACPFG
AITLDNSFPVIDVEKCVGCGSCVRTCPKNVIEITPSSARVWVPCSTKDPGKAVRSVCEVGCITCKMCIKACPAGAVRVEG
DLIRIDHKKCADYGVECKEICVEKCPRNIFRPFEAAVKKAEQVEAVA

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=194, Percent_Identity=30.4123711340206, Blast_Score=81, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 29879; Mature: 29879

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
9.8 %Cys+Met (Translated Protein)
8.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
9.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPVLVKLALGGIAFLVCIGLLFGIGLALAAQKFAVETNPKVEEVLEVLAGAQCGGCGYA
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCC
GCEGYAEAVVNDPEVSPNLCFPGKAAVAEAVAEITGKKLSGAANMVAAVRCSRIEGKVGQ
CHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHCCCCCC
KYKYLGYQTCAGANLAFGGPQECAYACLGFGDCVAACPFGAITLDNSFPVIDVEKCVGCG
EEHHCCCHHCCCCCCCCCCHHHHHHHHHCHHHHHHHCCCCEEEECCCCCEEEHHHHHCCH
SCVRTCPKNVIEITPSSARVWVPCSTKDPGKAVRSVCEVGCITCKMCIKACPAGAVRVEG
HHHHHCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
DLIRIDHKKCADYGVECKEICVEKCPRNIFRPFEAAVKKAEQVEAVA
CEEEECCHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDPVLVKLALGGIAFLVCIGLLFGIGLALAAQKFAVETNPKVEEVLEVLAGAQCGGCGYA
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCC
GCEGYAEAVVNDPEVSPNLCFPGKAAVAEAVAEITGKKLSGAANMVAAVRCSRIEGKVGQ
CHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHCCCCCC
KYKYLGYQTCAGANLAFGGPQECAYACLGFGDCVAACPFGAITLDNSFPVIDVEKCVGCG
EEHHCCCHHCCCCCCCCCCHHHHHHHHHCHHHHHHHCCCCEEEECCCCCEEEHHHHHCCH
SCVRTCPKNVIEITPSSARVWVPCSTKDPGKAVRSVCEVGCITCKMCIKACPAGAVRVEG
HHHHHCCHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
DLIRIDHKKCADYGVECKEICVEKCPRNIFRPFEAAVKKAEQVEAVA
CEEEECCHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA