| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is otsA [H]
Identifier: 85857979
GI number: 85857979
Start: 137822
End: 140068
Strand: Direct
Name: otsA [H]
Synonym: SYN_00622
Alternate gene names: 85857979
Gene position: 137822-140068 (Clockwise)
Preceding gene: 85857978
Following gene: 85857980
Centisome position: 4.33
GC content: 59.86
Gene sequence:
>2247_bases ATGACCAGCCGTTCACGCCGGGCCGATACAGCCCTCTGCTGGTGGACTGAACCCATGAAATGGCTGTTCCCACTGGACGT CCAGCTTTCCGGGAGAGGCGACAAGTTCCGGGGCGGGCTCATTGTCGCTTCCAACCGGGAACCGTACGCACACCGAATGA CCGATCAGGGATTGCAACTGGAATTCTCTGTTGGCGGGGTCGTTTCAGCCCTCGATACGGTCCTGCGGGTGACAGGGGGA ACATGGGTTGCCTGGGGAAGCGGCAGCGGCGACCGGGAGGGGGCGGATGCCGGTGGCCGTCTGTGGGTCCCGCCGGAAAA CCCGGCCTATACCCTCAGAAGAATCTGGCTTTCCGCGGCAGCGGTGGAAAATTATTATCACGGGTTCTGCAATCTGGTCC TCTGGCCGCTCTTTCATGACGAAACGGATCGTATCGTCTACGCTCCCCCTTTCTGGGCGGAGTATGAAAAGACCAACCGG GTGTTTGCCGAAGCGATTCTCGAAGAATGCAGGGCGGATTCCACGATCTGGATCCATGACTATCACCTCTGCCTCGTTCC CCGGATGCTACGCGGGGTGTCCCCGGATCGGACCATCGCCCATTTCTGGCACATACCCTGGCCCGAGCGGGAACTGTTCG CCTGTGCCCCCCATGGCGAAGAAATCCTTGCCGGGCTTCTCGGAAATGACCTTCTCGGCTTTCAGATTCCTCTCTATGCA GGGAATTTCATGGCCTGTGCCGCGGCATGTCTCGGTGCGGGCATCGATTACGATGCCATGACCGTTGCCTGGGAGGGGCG CATCACCCGGATTCGGCGCCTCAGGGAAAAATACCGTCTGCCCCGGCGTGTCGGCCTTGCGGTCGACCGGCTCGACTACA CCAAGGGAATCGTTCAGCGACTCCGGGCGCTTGAGCTTTTTTTCCGAGACAACCCTGACTTCCGGGGGAAATTTTCCTTC ATTCAGGTTGCCGTCATGACTCGGAACGGGGAGCCGTACCTGCGCCACCGCCGGGAAGTCGAGAACCGAATCGCCCGAAT CAACGCGGAGTTCGGCACGGCGGACTGGAGACCGATCATCTATTTCAAAAACAAACTAGATCAGCAGGATCTTGTTGCCT GTTACCGGATGGCGGATGTGGCCGTCATCACCCCGCTTCGTGACGGGATGAACCTGGTGGCGAAGGAATATGTGGCCTCC AGGGGAGACGGGGACGGCGTCCTGATCCTGGGCAGACAGGCCGGCGCAGCCGCCGAACTGACCGAGTCGATTCTTGTCGA TCCAACTGATATCGAGGCATGCGCCGCCGCCATCCATGAGGCTCTCACTCTGTCCAGCGGGGAGAAAAAAAAGCGGATGA CGCAGTTAAGGGAACAGGTGCAGGGGAATACGGTTTATTCCTGGGTCGGCGACATCCTCGATGAGCTTTCCCTCCTCCCC GTCACGAAACAGGGAGGAAAACATGCCCTCGCGCATGAGGATGAAATCGCCGCCCGCCTTGCCGGGCGGGAACTCTTTCT CTGCCTGGATTTCGACGGCACTCTCGCCCCCATCGTGGAGCAGCCGGAACTGGCGGCCATACCGGACGATATCCGCCTCC TCCTCGCCGTGCTGCAGGAGCATTATCCTGTCGCAGTGATCAGCGGCAGAAGCCTTGACGACATCAGGAATCGTGTGGGT TTGCCGGGCCTTGTGTATGCGGGGAGCCATGGGGCGGAGACGGAAAAGGGAACGGGCGGCGACGGCGGCCGCGCCGCACT GGATGCATTTCTCGCCGCGGTGCACCAGGCATTGGCCTGCCTTCCCGGGGTTCAGATAGAGGACAAGGGATTGACGGTCA GCATCCATTTCAGGCGGATAGCGCCGGTGCTTCTGGAGAATTTCCTGGATTCTTTCCAGGGGATTGCCCGGAAGTTTGTG GGAACGGTCAGTGTGATCGAAGGGAGAAAGGTCTTCGAGATCCGGCCGCAGGGGGCAACCGGCAAAGGGGACGCAGTGCG GCAGCTACTGGAGGGAATAGGTAAAGGAGGGCTTCCGGTCTATATGGGAGATGACACGAACGATGAAGAAGCGTTCCGGG CGGTTCGGGGGAATGGGATAACCGTCGCCGTCGGGGGAAGCACGGAGGCGGAATTCTATTTGAGGAACCAGGGGGAGGTC AGGAAATTCCTCGCGTTGCTGGCCCGGATCTCACTTCCCGATGAAAAACAATGCTACGCAGTGGACGAAGGGGGTACAAC AAAATGA
Upstream 100 bases:
>100_bases GCCGCCGGCGGGCTCAGCCTCGTCCGGGGAAAGGAGCTCATGTATCTGGTGCTCAACTTCCTGGATCGGGGAAAACTCTG GGGGCTCATGGATTCGCCCG
Downstream 100 bases:
>100_bases TCGGCGAGACGGTTCCGAAGATCGAAACAGGGGTCATCCATGGCCGCTTTCAGGTGTTTCATAACGACCACCTAAAGTAC CTTCTCGCCGGAATGCGACT
Product: bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB
Products: UDP; alpha,alpha'-Trehalose 6-phosphate
Alternate protein names: TPS; Trehalose-6-phosphate synthase [H]
Number of amino acids: Translated: 748; Mature: 747
Protein sequence:
>748_residues MTSRSRRADTALCWWTEPMKWLFPLDVQLSGRGDKFRGGLIVASNREPYAHRMTDQGLQLEFSVGGVVSALDTVLRVTGG TWVAWGSGSGDREGADAGGRLWVPPENPAYTLRRIWLSAAAVENYYHGFCNLVLWPLFHDETDRIVYAPPFWAEYEKTNR VFAEAILEECRADSTIWIHDYHLCLVPRMLRGVSPDRTIAHFWHIPWPERELFACAPHGEEILAGLLGNDLLGFQIPLYA GNFMACAAACLGAGIDYDAMTVAWEGRITRIRRLREKYRLPRRVGLAVDRLDYTKGIVQRLRALELFFRDNPDFRGKFSF IQVAVMTRNGEPYLRHRREVENRIARINAEFGTADWRPIIYFKNKLDQQDLVACYRMADVAVITPLRDGMNLVAKEYVAS RGDGDGVLILGRQAGAAAELTESILVDPTDIEACAAAIHEALTLSSGEKKKRMTQLREQVQGNTVYSWVGDILDELSLLP VTKQGGKHALAHEDEIAARLAGRELFLCLDFDGTLAPIVEQPELAAIPDDIRLLLAVLQEHYPVAVISGRSLDDIRNRVG LPGLVYAGSHGAETEKGTGGDGGRAALDAFLAAVHQALACLPGVQIEDKGLTVSIHFRRIAPVLLENFLDSFQGIARKFV GTVSVIEGRKVFEIRPQGATGKGDAVRQLLEGIGKGGLPVYMGDDTNDEEAFRAVRGNGITVAVGGSTEAEFYLRNQGEV RKFLALLARISLPDEKQCYAVDEGGTTK
Sequences:
>Translated_748_residues MTSRSRRADTALCWWTEPMKWLFPLDVQLSGRGDKFRGGLIVASNREPYAHRMTDQGLQLEFSVGGVVSALDTVLRVTGG TWVAWGSGSGDREGADAGGRLWVPPENPAYTLRRIWLSAAAVENYYHGFCNLVLWPLFHDETDRIVYAPPFWAEYEKTNR VFAEAILEECRADSTIWIHDYHLCLVPRMLRGVSPDRTIAHFWHIPWPERELFACAPHGEEILAGLLGNDLLGFQIPLYA GNFMACAAACLGAGIDYDAMTVAWEGRITRIRRLREKYRLPRRVGLAVDRLDYTKGIVQRLRALELFFRDNPDFRGKFSF IQVAVMTRNGEPYLRHRREVENRIARINAEFGTADWRPIIYFKNKLDQQDLVACYRMADVAVITPLRDGMNLVAKEYVAS RGDGDGVLILGRQAGAAAELTESILVDPTDIEACAAAIHEALTLSSGEKKKRMTQLREQVQGNTVYSWVGDILDELSLLP VTKQGGKHALAHEDEIAARLAGRELFLCLDFDGTLAPIVEQPELAAIPDDIRLLLAVLQEHYPVAVISGRSLDDIRNRVG LPGLVYAGSHGAETEKGTGGDGGRAALDAFLAAVHQALACLPGVQIEDKGLTVSIHFRRIAPVLLENFLDSFQGIARKFV GTVSVIEGRKVFEIRPQGATGKGDAVRQLLEGIGKGGLPVYMGDDTNDEEAFRAVRGNGITVAVGGSTEAEFYLRNQGEV RKFLALLARISLPDEKQCYAVDEGGTTK >Mature_747_residues TSRSRRADTALCWWTEPMKWLFPLDVQLSGRGDKFRGGLIVASNREPYAHRMTDQGLQLEFSVGGVVSALDTVLRVTGGT WVAWGSGSGDREGADAGGRLWVPPENPAYTLRRIWLSAAAVENYYHGFCNLVLWPLFHDETDRIVYAPPFWAEYEKTNRV FAEAILEECRADSTIWIHDYHLCLVPRMLRGVSPDRTIAHFWHIPWPERELFACAPHGEEILAGLLGNDLLGFQIPLYAG NFMACAAACLGAGIDYDAMTVAWEGRITRIRRLREKYRLPRRVGLAVDRLDYTKGIVQRLRALELFFRDNPDFRGKFSFI QVAVMTRNGEPYLRHRREVENRIARINAEFGTADWRPIIYFKNKLDQQDLVACYRMADVAVITPLRDGMNLVAKEYVASR GDGDGVLILGRQAGAAAELTESILVDPTDIEACAAAIHEALTLSSGEKKKRMTQLREQVQGNTVYSWVGDILDELSLLPV TKQGGKHALAHEDEIAARLAGRELFLCLDFDGTLAPIVEQPELAAIPDDIRLLLAVLQEHYPVAVISGRSLDDIRNRVGL PGLVYAGSHGAETEKGTGGDGGRAALDAFLAAVHQALACLPGVQIEDKGLTVSIHFRRIAPVLLENFLDSFQGIARKFVG TVSVIEGRKVFEIRPQGATGKGDAVRQLLEGIGKGGLPVYMGDDTNDEEAFRAVRGNGITVAVGGSTEAEFYLRNQGEVR KFLALLARISLPDEKQCYAVDEGGTTK
Specific function: Catalyzes the transfer of glucose from a nucleoside diphosphate-glucose to glucose-6-phosphate to form trehalose-6- phosphate and nucleoside diphosphate [H]
COG id: COG0380
COG function: function code G; Trehalose-6-phosphate synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 20 family [H]
Homologues:
Organism=Escherichia coli, GI1788206, Length=470, Percent_Identity=31.063829787234, Blast_Score=221, Evalue=1e-58, Organism=Escherichia coli, GI1788207, Length=228, Percent_Identity=31.5789473684211, Blast_Score=87, Evalue=4e-18, Organism=Caenorhabditis elegans, GI115533558, Length=364, Percent_Identity=28.2967032967033, Blast_Score=133, Evalue=3e-31, Organism=Caenorhabditis elegans, GI115533560, Length=364, Percent_Identity=28.2967032967033, Blast_Score=133, Evalue=4e-31, Organism=Caenorhabditis elegans, GI71987012, Length=424, Percent_Identity=26.6509433962264, Blast_Score=129, Evalue=6e-30, Organism=Saccharomyces cerevisiae, GI6319602, Length=471, Percent_Identity=32.6963906581741, Blast_Score=248, Evalue=2e-66, Organism=Saccharomyces cerevisiae, GI6320279, Length=686, Percent_Identity=26.6763848396501, Blast_Score=214, Evalue=6e-56, Organism=Saccharomyces cerevisiae, GI6323537, Length=383, Percent_Identity=27.154046997389, Blast_Score=177, Evalue=6e-45, Organism=Saccharomyces cerevisiae, GI6323917, Length=380, Percent_Identity=28.1578947368421, Blast_Score=171, Evalue=4e-43, Organism=Drosophila melanogaster, GI19920676, Length=765, Percent_Identity=32.6797385620915, Blast_Score=339, Evalue=5e-93, Organism=Drosophila melanogaster, GI20129309, Length=232, Percent_Identity=29.3103448275862, Blast_Score=93, Evalue=7e-19, Organism=Drosophila melanogaster, GI221473368, Length=241, Percent_Identity=28.6307053941909, Blast_Score=90, Evalue=5e-18, Organism=Drosophila melanogaster, GI20129307, Length=241, Percent_Identity=28.6307053941909, Blast_Score=90, Evalue=5e-18, Organism=Drosophila melanogaster, GI24582490, Length=241, Percent_Identity=28.6307053941909, Blast_Score=90, Evalue=5e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001830 [H]
Pfam domain/function: PF00982 Glyco_transf_20 [H]
EC number: 2.4.1.15
Molecular weight: Translated: 82774; Mature: 82642
Theoretical pI: Translated: 6.12; Mature: 6.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSRSRRADTALCWWTEPMKWLFPLDVQLSGRGDKFRGGLIVASNREPYAHRMTDQGLQL CCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEECCCCCHHHHHCCCCCEE EFSVGGVVSALDTVLRVTGGTWVAWGSGSGDREGADAGGRLWVPPENPAYTLRRIWLSAA EEECCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHH AVENYYHGFCNLVLWPLFHDETDRIVYAPPFWAEYEKTNRVFAEAILEECRADSTIWIHD HHHHHHHHHHHHHEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE YHLCLVPRMLRGVSPDRTIAHFWHIPWPERELFACAPHGEEILAGLLGNDLLGFQIPLYA HHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEECCCHHHHHHHHHCCCCCCEEEEHHC GNFMACAAACLGAGIDYDAMTVAWEGRITRIRRLREKYRLPRRVGLAVDRLDYTKGIVQR CCHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHH LRALELFFRDNPDFRGKFSFIQVAVMTRNGEPYLRHRREVENRIARINAEFGTADWRPII HHHHHHHHCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHEEECCCCCCCCEEEE YFKNKLDQQDLVACYRMADVAVITPLRDGMNLVAKEYVASRGDGDGVLILGRQAGAAAEL EECCCCCHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHH TESILVDPTDIEACAAAIHEALTLSSGEKKKRMTQLREQVQGNTVYSWVGDILDELSLLP HHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC VTKQGGKHALAHEDEIAARLAGRELFLCLDFDGTLAPIVEQPELAAIPDDIRLLLAVLQE EECCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHC HYPVAVISGRSLDDIRNRVGLPGLVYAGSHGAETEKGTGGDGGRAALDAFLAAVHQALAC CCCEEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH LPGVQIEDKGLTVSIHFRRIAPVLLENFLDSFQGIARKFVGTVSVIEGRKVFEIRPQGAT CCCCEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEECCCCCC GKGDAVRQLLEGIGKGGLPVYMGDDTNDEEAFRAVRGNGITVAVGGSTEAEFYLRNQGEV CCCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCEEEEECCCCCEEEEECCCCHH RKFLALLARISLPDEKQCYAVDEGGTTK HHHHHHHHHCCCCCCCCEEEECCCCCCC >Mature Secondary Structure TSRSRRADTALCWWTEPMKWLFPLDVQLSGRGDKFRGGLIVASNREPYAHRMTDQGLQL CCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEECCCCCHHHHHCCCCCEE EFSVGGVVSALDTVLRVTGGTWVAWGSGSGDREGADAGGRLWVPPENPAYTLRRIWLSAA EEECCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHH AVENYYHGFCNLVLWPLFHDETDRIVYAPPFWAEYEKTNRVFAEAILEECRADSTIWIHD HHHHHHHHHHHHHEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE YHLCLVPRMLRGVSPDRTIAHFWHIPWPERELFACAPHGEEILAGLLGNDLLGFQIPLYA HHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEECCCHHHHHHHHHCCCCCCEEEEHHC GNFMACAAACLGAGIDYDAMTVAWEGRITRIRRLREKYRLPRRVGLAVDRLDYTKGIVQR CCHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHH LRALELFFRDNPDFRGKFSFIQVAVMTRNGEPYLRHRREVENRIARINAEFGTADWRPII HHHHHHHHCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHEEECCCCCCCCEEEE YFKNKLDQQDLVACYRMADVAVITPLRDGMNLVAKEYVASRGDGDGVLILGRQAGAAAEL EECCCCCHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHH TESILVDPTDIEACAAAIHEALTLSSGEKKKRMTQLREQVQGNTVYSWVGDILDELSLLP HHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC VTKQGGKHALAHEDEIAARLAGRELFLCLDFDGTLAPIVEQPELAAIPDDIRLLLAVLQE EECCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHC HYPVAVISGRSLDDIRNRVGLPGLVYAGSHGAETEKGTGGDGGRAALDAFLAAVHQALAC CCCEEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH LPGVQIEDKGLTVSIHFRRIAPVLLENFLDSFQGIARKFVGTVSVIEGRKVFEIRPQGAT CCCCEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEECCCCCC GKGDAVRQLLEGIGKGGLPVYMGDDTNDEEAFRAVRGNGITVAVGGSTEAEFYLRNQGEV CCCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCEEEEECCCCCEEEEECCCCHH RKFLALLARISLPDEKQCYAVDEGGTTK HHHHHHHHHCCCCCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: Monovalent cations [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: UDP-glucose; D-glucose 6-phosphate
Specific reaction: UDP-glucose + D-glucose 6-phosphate = UDP + alpha,alpha-trehalose 6-phosphate
General reaction: Hexosyl group transfer [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA