Click here to switch to the map view.

The map label for this gene is vhuG [H]

Identifier: 85857970

GI number: 85857970

Start: 129325

End: 130086

Strand: Direct

Name: vhuG [H]

Synonym: SYN_02221

Alternate gene names: 85857970

Gene position: 129325-130086 (Clockwise)

Preceding gene: 85857969

Following gene: 85857971

Centisome position: 4.07

GC content: 52.23

Gene sequence:

>762_bases
ATGGAAAGGATGCTTATGAAACCCAAAGTTGCCTTTTTTGATTTCGCCTGCTGCGAAGGGTGCCAGCTTCAGGTTGCCAA
CCTGGGCGAAGCCCTTCTGGATATCCTGGGCGCCATCGACGTGGTGGAGTTTCGGGAAGTGATGTCGGAGAAGTGGGACA
AAAACTACGACGTTGCGATTGTAGAAGGCAGTATTACGGACGAACATGCGGAACAACGGATCAGGAAAATCCGGGATAGA
TCCGCTGTGCTTATCGCCTACGGTTCCTGTGCGACAATCGGCGGCGTCAACGGCATGAAGAACTCCTTCGTTCTGGACGA
GATCCGGCAGTCCGTTTACGGGAAGGATTATCAACTCTTTGACAGCAAGAAGACGCGGCCGATCCATCAGGTCGTCAAGG
TGGACTATTTCATCAACGGTTGTCCCGTTTATCACCCTGAGGTGATCGAGGTCCTGAAATGCGCCCTCCGGGGCGTTCCC
TACGCCGTGCCGGACAATCCCGTCTGTTCGGAGTGTAAACTGAATGAAAATGTCTGCATGTACGATCGGGGGGTCGCCTG
TCTGGGCCCCTGGACGAAAGCGGGCTGTAATTCCTGGTGCATCAACAACGGCAACATCTGTTACGGATGCCGGGGCATGG
TGACCAATCCCGCCAGAAACGGGGCCAATGATATTATGGCCCGGTATGATCTGAATTTCGATTTGATTCGAAACAAATTC
GACATGTATAACAAATGCAGCGAGGAAGATAAAAATGGCTAA

Upstream 100 bases:

>100_bases
ATGCGGGCACTGTCAGATCGATCATCCGAAGAATTATTATTGCTGTAAAGATGGTCCCACATTCAGCTACGACGAAGTGA
AGGAAGCGAAGAAACTTTAA

Downstream 100 bases:

>100_bases
TAAAACCGTAAAGATAGACGTCGAATATCTTACCCGCGTAGAAGGGCACGGCAACATCGTCATCGATGTCAAGGAAGGGA
AAATCGATAAGTGTGAATTT

Product: nickel-dependent hydrogenase, small chain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MERMLMKPKVAFFDFACCEGCQLQVANLGEALLDILGAIDVVEFREVMSEKWDKNYDVAIVEGSITDEHAEQRIRKIRDR
SAVLIAYGSCATIGGVNGMKNSFVLDEIRQSVYGKDYQLFDSKKTRPIHQVVKVDYFINGCPVYHPEVIEVLKCALRGVP
YAVPDNPVCSECKLNENVCMYDRGVACLGPWTKAGCNSWCINNGNICYGCRGMVTNPARNGANDIMARYDLNFDLIRNKF
DMYNKCSEEDKNG

Sequences:

>Translated_253_residues
MERMLMKPKVAFFDFACCEGCQLQVANLGEALLDILGAIDVVEFREVMSEKWDKNYDVAIVEGSITDEHAEQRIRKIRDR
SAVLIAYGSCATIGGVNGMKNSFVLDEIRQSVYGKDYQLFDSKKTRPIHQVVKVDYFINGCPVYHPEVIEVLKCALRGVP
YAVPDNPVCSECKLNENVCMYDRGVACLGPWTKAGCNSWCINNGNICYGCRGMVTNPARNGANDIMARYDLNFDLIRNKF
DMYNKCSEEDKNG
>Mature_253_residues
MERMLMKPKVAFFDFACCEGCQLQVANLGEALLDILGAIDVVEFREVMSEKWDKNYDVAIVEGSITDEHAEQRIRKIRDR
SAVLIAYGSCATIGGVNGMKNSFVLDEIRQSVYGKDYQLFDSKKTRPIHQVVKVDYFINGCPVYHPEVIEVLKCALRGVP
YAVPDNPVCSECKLNENVCMYDRGVACLGPWTKAGCNSWCINNGNICYGCRGMVTNPARNGANDIMARYDLNFDLIRNKF
DMYNKCSEEDKNG

Specific function: Unknown

COG id: COG1941

COG function: function code C; Coenzyme F420-reducing hydrogenase, gamma subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the [NiFe]/[NiFeSe] hydrogenase small subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006137 [H]

Pfam domain/function: PF01058 Oxidored_q6 [H]

EC number: NA

Molecular weight: Translated: 28478; Mature: 28478

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
9.5 %Cys+Met (Translated Protein)
5.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
9.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERMLMKPKVAFFDFACCEGCQLQVANLGEALLDILGAIDVVEFREVMSEKWDKNYDVAI
CCCCCCCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
VEGSITDEHAEQRIRKIRDRSAVLIAYGSCATIGGVNGMKNSFVLDEIRQSVYGKDYQLF
EECCCCHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEC
DSKKTRPIHQVVKVDYFINGCPVYHPEVIEVLKCALRGVPYAVPDNPVCSECKLNENVCM
CCCCCCHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEE
YDRGVACLGPWTKAGCNSWCINNGNICYGCRGMVTNPARNGANDIMARYDLNFDLIRNKF
ECCCEEEECCCCCCCCCCEEECCCCEEEECCCCCCCCCCCCHHHHHEEECCCHHHHHHHH
DMYNKCSEEDKNG
HHHHHHCCCCCCC
>Mature Secondary Structure
MERMLMKPKVAFFDFACCEGCQLQVANLGEALLDILGAIDVVEFREVMSEKWDKNYDVAI
CCCCCCCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
VEGSITDEHAEQRIRKIRDRSAVLIAYGSCATIGGVNGMKNSFVLDEIRQSVYGKDYQLF
EECCCCHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEC
DSKKTRPIHQVVKVDYFINGCPVYHPEVIEVLKCALRGVPYAVPDNPVCSECKLNENVCM
CCCCCCHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEE
YDRGVACLGPWTKAGCNSWCINNGNICYGCRGMVTNPARNGANDIMARYDLNFDLIRNKF
ECCCEEEECCCCCCCCCCEEECCCCEEEECCCCCCCCCCCCHHHHHEEECCCHHHHHHHH
DMYNKCSEEDKNG
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1603063 [H]