Click here to switch to the map view.

The map label for this gene is recR

Identifier: 85857925

GI number: 85857925

Start: 82268

End: 82879

Strand: Direct

Name: recR

Synonym: SYN_03272

Alternate gene names: 85857925

Gene position: 82268-82879 (Clockwise)

Preceding gene: 85857924

Following gene: 85857926

Centisome position: 2.59

GC content: 57.19

Gene sequence:

>612_bases
ATGGCAGGATATCCCCTTCCCATTAAACATCTGATTTCGGAACTGGGAAAACTTCCGGGAATCGGGGAAAAAACGGCGAC
CAGACTGGCGATGCACATTCTGAGAGCCCCGGAAGGCGATGCTCGCGCTCTGGCCGACAGCATTCTGGAGGTTCGGGATA
AAATCCGGTTCTGTCGGGTCTGCTACAATTTTTCCGAGGCCGAGTTGTGCACGGTTTGTCGCGATTCTGCCCGGGATTCG
AGTCAGATCTGCGTCGTCGAGGATCCCGATGCCCTGATGGCGATCGAAGACAGCGGAAGTTATTCGGGGACTTATCATGT
CCTGCACGGCGTTCTGTCTCCGTTGGACGGGATCGGGCCTGAGCAGTTGAAACTGCGGGAACTGGTTGAACGGATCCGGG
AAAGTGGGGTCCGGGAGGTTATCCTGGCCACGAATCCCAATGTTTCGGGAGATTCGACGGCCCTTTTGATTTCCCGTATG
ATCGGGCCGCTGGCTGTCACCGTGACCCGGATCGCCCAGGGAGTTCCCATGGGCAGCGATCTCCGGTATATGGATCGGAT
GACCCTGTCCAAATCGCTGGAATTCCGCCGGGGCATGGAGAAAGAGCCGTGA

Upstream 100 bases:

>100_bases
AAGGCATTCGCAAGGCGCAGGAGATGACGTCCTCGGAAATGGCCAAGATTACCGGGGGGATGAATATTCCCGGGTTGATG
TAGAGGAGGGGGGGTTTTCA

Downstream 100 bases:

>100_bases
GGCCTTCAGGAAAGTCGATATCGGAATGATGAGCCGAATCAGAGAAATTTTCGTGGAGACTGTCACGGATACCGTGCGGG
AGCTTTTCATCGCTGCAAAC

Product: recombination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MAGYPLPIKHLISELGKLPGIGEKTATRLAMHILRAPEGDARALADSILEVRDKIRFCRVCYNFSEAELCTVCRDSARDS
SQICVVEDPDALMAIEDSGSYSGTYHVLHGVLSPLDGIGPEQLKLRELVERIRESGVREVILATNPNVSGDSTALLISRM
IGPLAVTVTRIAQGVPMGSDLRYMDRMTLSKSLEFRRGMEKEP

Sequences:

>Translated_203_residues
MAGYPLPIKHLISELGKLPGIGEKTATRLAMHILRAPEGDARALADSILEVRDKIRFCRVCYNFSEAELCTVCRDSARDS
SQICVVEDPDALMAIEDSGSYSGTYHVLHGVLSPLDGIGPEQLKLRELVERIRESGVREVILATNPNVSGDSTALLISRM
IGPLAVTVTRIAQGVPMGSDLRYMDRMTLSKSLEFRRGMEKEP
>Mature_202_residues
AGYPLPIKHLISELGKLPGIGEKTATRLAMHILRAPEGDARALADSILEVRDKIRFCRVCYNFSEAELCTVCRDSARDSS
QICVVEDPDALMAIEDSGSYSGTYHVLHGVLSPLDGIGPEQLKLRELVERIRESGVREVILATNPNVSGDSTALLISRMI
GPLAVTVTRIAQGVPMGSDLRYMDRMTLSKSLEFRRGMEKEP

Specific function: May play a role in DNA repair. It seems to be involved in an recBC-independent recombinational process of DNA repair. It may act with recF and recO

COG id: COG0353

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain

Homologues:

Organism=Escherichia coli, GI1786678, Length=197, Percent_Identity=42.6395939086294, Blast_Score=152, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECR_SYNAS (Q2LYF5)

Other databases:

- EMBL:   CP000252
- RefSeq:   YP_460127.1
- ProteinModelPortal:   Q2LYF5
- SMR:   Q2LYF5
- STRING:   Q2LYF5
- GeneID:   3884513
- GenomeReviews:   CP000252_GR
- KEGG:   sat:SYN_03272
- NMPDR:   fig|56780.10.peg.77
- eggNOG:   COG0353
- HOGENOM:   HBG571744
- OMA:   HGAISPM
- PhylomeDB:   Q2LYF5
- BioCyc:   SACI56780:SYN_03272-MONOMER
- HAMAP:   MF_00017
- InterPro:   IPR003583
- InterPro:   IPR000093
- InterPro:   IPR006171
- InterPro:   IPR015967
- SMART:   SM00278
- SMART:   SM00493
- TIGRFAMs:   TIGR00615

Pfam domain/function: PF02132 RecR; PF01751 Toprim; SSF111304 RecR

EC number: NA

Molecular weight: Translated: 22284; Mature: 22153

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS01300 RECR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGYPLPIKHLISELGKLPGIGEKTATRLAMHILRAPEGDARALADSILEVRDKIRFCRV
CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
CYNFSEAELCTVCRDSARDSSQICVVEDPDALMAIEDSGSYSGTYHVLHGVLSPLDGIGP
HHCCCHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCH
EQLKLRELVERIRESGVREVILATNPNVSGDSTALLISRMIGPLAVTVTRIAQGVPMGSD
HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
LRYMDRMTLSKSLEFRRGMEKEP
HHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AGYPLPIKHLISELGKLPGIGEKTATRLAMHILRAPEGDARALADSILEVRDKIRFCRV
CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
CYNFSEAELCTVCRDSARDSSQICVVEDPDALMAIEDSGSYSGTYHVLHGVLSPLDGIGP
HHCCCHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCH
EQLKLRELVERIRESGVREVILATNPNVSGDSTALLISRMIGPLAVTVTRIAQGVPMGSD
HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
LRYMDRMTLSKSLEFRRGMEKEP
HHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA