| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is engD [H]
Identifier: 85857918
GI number: 85857918
Start: 75316
End: 76374
Strand: Direct
Name: engD [H]
Synonym: SYN_00167
Alternate gene names: 85857918
Gene position: 75316-76374 (Clockwise)
Preceding gene: 85857917
Following gene: 85857919
Centisome position: 2.37
GC content: 58.45
Gene sequence:
>1059_bases GTGTTACTCACAAAGGAGGAATCAGCAATGGAAATCGGGATTCTGGGTCTTCCCCAGAGTGGAAAAAGCACCCTTTTCGA AATCATGACAGGCGTCCGCAGCTGCGATGTTCATGGGGAACAGTGTGTCCGCGGACAGGCCTCCGTTCCCGACAGACGGT TTGACCGGCTTGTGGAAATCTATAAACCCCTTCGGGCCGTGCCTGCCCGGGTTCCCTTTACGGATGTGAACGCCGCGGGT GAAAAGGCGTGGGAAACGGTTCGCCAGGCGCTCAGCGGCGCCGAAGGCCTGCTCCATGTGGTGGACTGCTTTTCGGACAG ATCGATTTCGGCCATGGTGAATCGCTGCCGGCAACTGGATGACGAACTGATCCTCTCCGATCTGGTGGTGGTGGAGAACC GCCGCGAGCGGCTCTTGAAGGTGGCCAAAAAAAACCTGAAGCCGCCTGAATCTCTCCATGTGGAGCTGATGCCGCGCCTG CAGGAGCAGCTCGAAAGCGGGAGGCCCTTGCGGGAACTGAATCTGACGGTTGAGGAACGCCATGCTCTGTCCAGTTTTTC TTTCTGGACGCTGAGACCGGAACTGGTTGTCCTTAATGTGGCTGAAGATGGTTTCCCGACCGTGGAAGCCTTTCAGACGG AAGCCGGGCTGGTGGAGCCGGTGATGGGGATCTGCTGCGAGCTGGAAGCGGAAGTGGCCTCTCTTCCCACTGAGGAGCAG CAGGAATTCCTGGCGGCCCTGGGCATGGAAGAACCTGCTTTCGGACGGGTGATCCGCGCCGCCTTTTCTCTCCTCGGGCG GATATCCTACTTTACCGTGGGAGAGGACGAGGTGAAGGCCTGGGTCATTCCGGAAGGGACAAAGGCCCCACGCGCAGCCG CGGCCATTCACAAGGATTTTGAAAGGGGTTTCATCAAAGCCGAAGTGGTAGCTTATGATGATTTCATCGCCTGCGGCGGC TCTCACGCCAAAGCCAAGGCGGCGGGGAAGGTCCGCCTGGAAGGCAAGGATTATATCGTGCGGGACGGCGACATCATCAC CTTCCGATTCAACGTCTGA
Upstream 100 bases:
>100_bases GGTTCGACGTTTAATGTTCTCACCGTAATATTCCGACCTTGAACATTGAACGTAGCGCCCCCCGTCGAGGTGGCGCTTTG TTAGTGAGTAACTTGTTTTC
Downstream 100 bases:
>100_bases TCTTTCTTTTTCCCTTACAGGCAAGACGAAGAGCAGACGGCCTATCATCCAAATTCTTATTGCAGAGGTTCATAATTATG AAAATCAAATTTTTAGGCGC
Product: GTP-dependent nucleic acid-binding protein EngD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 352; Mature: 352
Protein sequence:
>352_residues MLLTKEESAMEIGILGLPQSGKSTLFEIMTGVRSCDVHGEQCVRGQASVPDRRFDRLVEIYKPLRAVPARVPFTDVNAAG EKAWETVRQALSGAEGLLHVVDCFSDRSISAMVNRCRQLDDELILSDLVVVENRRERLLKVAKKNLKPPESLHVELMPRL QEQLESGRPLRELNLTVEERHALSSFSFWTLRPELVVLNVAEDGFPTVEAFQTEAGLVEPVMGICCELEAEVASLPTEEQ QEFLAALGMEEPAFGRVIRAAFSLLGRISYFTVGEDEVKAWVIPEGTKAPRAAAAIHKDFERGFIKAEVVAYDDFIACGG SHAKAKAAGKVRLEGKDYIVRDGDIITFRFNV
Sequences:
>Translated_352_residues MLLTKEESAMEIGILGLPQSGKSTLFEIMTGVRSCDVHGEQCVRGQASVPDRRFDRLVEIYKPLRAVPARVPFTDVNAAG EKAWETVRQALSGAEGLLHVVDCFSDRSISAMVNRCRQLDDELILSDLVVVENRRERLLKVAKKNLKPPESLHVELMPRL QEQLESGRPLRELNLTVEERHALSSFSFWTLRPELVVLNVAEDGFPTVEAFQTEAGLVEPVMGICCELEAEVASLPTEEQ QEFLAALGMEEPAFGRVIRAAFSLLGRISYFTVGEDEVKAWVIPEGTKAPRAAAAIHKDFERGFIKAEVVAYDDFIACGG SHAKAKAAGKVRLEGKDYIVRDGDIITFRFNV >Mature_352_residues MLLTKEESAMEIGILGLPQSGKSTLFEIMTGVRSCDVHGEQCVRGQASVPDRRFDRLVEIYKPLRAVPARVPFTDVNAAG EKAWETVRQALSGAEGLLHVVDCFSDRSISAMVNRCRQLDDELILSDLVVVENRRERLLKVAKKNLKPPESLHVELMPRL QEQLESGRPLRELNLTVEERHALSSFSFWTLRPELVVLNVAEDGFPTVEAFQTEAGLVEPVMGICCELEAEVASLPTEEQ QEFLAALGMEEPAFGRVIRAAFSLLGRISYFTVGEDEVKAWVIPEGTKAPRAAAAIHKDFERGFIKAEVVAYDDFIACGG SHAKAKAAGKVRLEGKDYIVRDGDIITFRFNV
Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]
COG id: COG0012
COG function: function code J; Predicted GTPase, probable translation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI58761500, Length=377, Percent_Identity=33.42175066313, Blast_Score=179, Evalue=4e-45, Organism=Homo sapiens, GI58761502, Length=233, Percent_Identity=37.7682403433476, Blast_Score=130, Evalue=3e-30, Organism=Escherichia coli, GI1787454, Length=366, Percent_Identity=39.6174863387978, Blast_Score=239, Evalue=2e-64, Organism=Caenorhabditis elegans, GI17509631, Length=370, Percent_Identity=31.3513513513514, Blast_Score=177, Evalue=5e-45, Organism=Saccharomyces cerevisiae, GI6319499, Length=382, Percent_Identity=29.3193717277487, Blast_Score=133, Evalue=5e-32, Organism=Saccharomyces cerevisiae, GI6321773, Length=392, Percent_Identity=27.8061224489796, Blast_Score=126, Evalue=4e-30, Organism=Drosophila melanogaster, GI24640873, Length=375, Percent_Identity=32, Blast_Score=160, Evalue=2e-39, Organism=Drosophila melanogaster, GI24640877, Length=375, Percent_Identity=32, Blast_Score=160, Evalue=2e-39, Organism=Drosophila melanogaster, GI24640875, Length=375, Percent_Identity=32, Blast_Score=160, Evalue=2e-39, Organism=Drosophila melanogaster, GI24640879, Length=330, Percent_Identity=32.7272727272727, Blast_Score=142, Evalue=3e-34,
Paralogues:
None
Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012675 - InterPro: IPR004396 - InterPro: IPR013029 - InterPro: IPR006073 - InterPro: IPR002917 - InterPro: IPR012676 - InterPro: IPR023192 [H]
Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]
EC number: NA
Molecular weight: Translated: 39040; Mature: 39040
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLTKEESAMEIGILGLPQSGKSTLFEIMTGVRSCDVHGEQCVRGQASVPDRRFDRLVEI CCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHH YKPLRAVPARVPFTDVNAAGEKAWETVRQALSGAEGLLHVVDCFSDRSISAMVNRCRQLD HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHH DELILSDLVVVENRRERLLKVAKKNLKPPESLHVELMPRLQEQLESGRPLRELNLTVEER HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHH HALSSFSFWTLRPELVVLNVAEDGFPTVEAFQTEAGLVEPVMGICCELEAEVASLPTEEQ HHHHCCCEEEECCEEEEEEECCCCCCCHHHHHHHCCHHHHHHHHHHHCCHHHHHCCCHHH QEFLAALGMEEPAFGRVIRAAFSLLGRISYFTVGEDEVKAWVIPEGTKAPRAAAAIHKDF HHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCCCCCCCHHHHHHHHHH ERGFIKAEVVAYDDFIACGGSHAKAKAAGKVRLEGKDYIVRDGDIITFRFNV HHCCEEEEEEEECCHHHCCCCCCCHHCCCEEEECCCCEEEECCCEEEEEECC >Mature Secondary Structure MLLTKEESAMEIGILGLPQSGKSTLFEIMTGVRSCDVHGEQCVRGQASVPDRRFDRLVEI CCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHH YKPLRAVPARVPFTDVNAAGEKAWETVRQALSGAEGLLHVVDCFSDRSISAMVNRCRQLD HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHH DELILSDLVVVENRRERLLKVAKKNLKPPESLHVELMPRLQEQLESGRPLRELNLTVEER HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHH HALSSFSFWTLRPELVVLNVAEDGFPTVEAFQTEAGLVEPVMGICCELEAEVASLPTEEQ HHHHCCCEEEECCEEEEEEECCCCCCCHHHHHHHCCHHHHHHHHHHHCCHHHHHCCCHHH QEFLAALGMEEPAFGRVIRAAFSLLGRISYFTVGEDEVKAWVIPEGTKAPRAAAAIHKDF HHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCCCCCCCHHHHHHHHHH ERGFIKAEVVAYDDFIACGGSHAKAKAAGKVRLEGKDYIVRDGDIITFRFNV HHCCEEEEEEEECCHHHCCCCCCCHHCCCEEEECCCCEEEECCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]