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The map label for this gene is sodC1 [H]

Identifier: 85375616

GI number: 85375616

Start: 2810541

End: 2811077

Strand: Reverse

Name: sodC1 [H]

Synonym: ELI_13945

Alternate gene names: 85375616

Gene position: 2811077-2810541 (Counterclockwise)

Preceding gene: 85375617

Following gene: 85375608

Centisome position: 92.09

GC content: 68.34

Gene sequence:

>537_bases
ATGAAAGACTTGCCCGCCGCCCTCACAGCGACCGCCCTCATTGCCCTCTCGCTATCCGCCTGCACCTCGCTCGCCGACGT
GCCGAACGAACGCGTGGGCTCGGCGACATTCTCGCTGGCGAACGGGATACCCGCCGGCACCGCGCAGCTGGTGGCCAGCG
GAGACACCGTCACCCTGGCAGTCGCGGTCACCGGCATTTCGCCGGGCCAGCACGGATTCCATCTCCATGAAACCGGAACC
TGCGCCGCGCCGGACTTCACCTCGGCCGGCGGTCACCTCAATCCGGACAACGTCGGCCACGGCCTCGAAGACGACGACGG
TGCGCATCTCGGCGACCTGCCCAACCTGACCGTGTCGTCCTCCGGCACCGCGACCACGCGCGTCGACCTGCGCGGATCGC
GCAGCGAAGTGCTGGATGCAATCTTCGATGCCGACGGCACCGCCATCGTCATCCATGCCGATCCCGACGACGGCCGCACC
GACCCGTCCGGCAATGCCGGCAAGCGGGTGGCCTGCGCGGTAATCAAGCCGAGCTAA

Upstream 100 bases:

>100_bases
TCGGGCATGTAAGCGCGATTTTCGCCAAACGAATGAAGAGGGGCCGGAGCAATCCGGCCCCTTTTTCGTTATGGGGTTAT
GACACTTTTGGAGAGCCCCC

Downstream 100 bases:

>100_bases
CCCGCTATCAGATTTCTTCTCTGGCGGCCCGAGCGCGTTCGAGCACCGTCCTCTCGGCTTCGGGGACTGTCCGGTAGGCC
ACGAACAGCAGCATCAGTCC

Product: putative superoxide dismutase (Cu/Zn)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MKDLPAALTATALIALSLSACTSLADVPNERVGSATFSLANGIPAGTAQLVASGDTVTLAVAVTGISPGQHGFHLHETGT
CAAPDFTSAGGHLNPDNVGHGLEDDDGAHLGDLPNLTVSSSGTATTRVDLRGSRSEVLDAIFDADGTAIVIHADPDDGRT
DPSGNAGKRVACAVIKPS

Sequences:

>Translated_178_residues
MKDLPAALTATALIALSLSACTSLADVPNERVGSATFSLANGIPAGTAQLVASGDTVTLAVAVTGISPGQHGFHLHETGT
CAAPDFTSAGGHLNPDNVGHGLEDDDGAHLGDLPNLTVSSSGTATTRVDLRGSRSEVLDAIFDADGTAIVIHADPDDGRT
DPSGNAGKRVACAVIKPS
>Mature_178_residues
MKDLPAALTATALIALSLSACTSLADVPNERVGSATFSLANGIPAGTAQLVASGDTVTLAVAVTGISPGQHGFHLHETGT
CAAPDFTSAGGHLNPDNVGHGLEDDDGAHLGDLPNLTVSSSGTATTRVDLRGSRSEVLDAIFDADGTAIVIHADPDDGRT
DPSGNAGKRVACAVIKPS

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4826665, Length=122, Percent_Identity=34.4262295081967, Blast_Score=66, Evalue=2e-11,
Organism=Escherichia coli, GI1787934, Length=123, Percent_Identity=39.0243902439024, Blast_Score=74, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17554806, Length=177, Percent_Identity=34.4632768361582, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17537871, Length=125, Percent_Identity=36, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI85725006, Length=133, Percent_Identity=39.0977443609023, Blast_Score=71, Evalue=4e-13,
Organism=Drosophila melanogaster, GI45551081, Length=133, Percent_Identity=39.0977443609023, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24652737, Length=133, Percent_Identity=39.0977443609023, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI116007680, Length=133, Percent_Identity=39.0977443609023, Blast_Score=70, Evalue=5e-13,
Organism=Drosophila melanogaster, GI17136496, Length=148, Percent_Identity=36.4864864864865, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 17733; Mature: 17733

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDLPAALTATALIALSLSACTSLADVPNERVGSATFSLANGIPAGTAQLVASGDTVTLA
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHCCCCCCCEEEEECCCEEEEE
VAVTGISPGQHGFHLHETGTCAAPDFTSAGGHLNPDNVGHGLEDDDGAHLGDLPNLTVSS
EEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
SGTATTRVDLRGSRSEVLDAIFDADGTAIVIHADPDDGRTDPSGNAGKRVACAVIKPS
CCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCC
>Mature Secondary Structure
MKDLPAALTATALIALSLSACTSLADVPNERVGSATFSLANGIPAGTAQLVASGDTVTLA
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHCCCCCCCEEEEECCCEEEEE
VAVTGISPGQHGFHLHETGTCAAPDFTSAGGHLNPDNVGHGLEDDDGAHLGDLPNLTVSS
EEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
SGTATTRVDLRGSRSEVLDAIFDADGTAIVIHADPDDGRTDPSGNAGKRVACAVIKPS
CCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]