Click here to switch to the map view.

The map label for this gene is glf [C]

Identifier: 85375320

GI number: 85375320

Start: 2522112

End: 2523713

Strand: Reverse

Name: glf [C]

Synonym: ELI_12465

Alternate gene names: 85375320

Gene position: 2523713-2522112 (Counterclockwise)

Preceding gene: 85375321

Following gene: 85375319

Centisome position: 82.68

GC content: 62.11

Gene sequence:

>1602_bases
ATGCACAACGCCACTTCTCGCGAACTGAATGTCGACGTAGCCATCATCGGGGCAGGCCCGGCAGGCCTGACCGCAGGATA
CCTGCTGACCAAGGCCGGCAAGAGCGTCGCCATCATCGAGAAAGACGAGACCTATGTGGGTGGCATCAGCCGCACCGTCG
AACACGAAGGCTACCGCTTCGATATCGGCGGGCACCGCTTCTTCTCGAAGAGCGCTGCTGTCGTCGACCTGTGGAACGAG
ATCCTGCCCGACGATTTCATCCAGCGCCCGCGGATGAGCCGCATCTATTACGAAGGCAAGTTCTACAGCTACCCGCTGCG
CGCTTTCGAAGCGCTGTCGAACCTCGGCATCCTGCGCTCGACCGCCTGCATGGCGAGCTACCTCTGGTACAAGGCATTCC
CGATCAAGACCGTGAAGAGCTTCGAGGACTGGACCACCAACCAGTTCGGCCAGAAGCTCTATTCGATCTTCTTCAAGACC
TATACCGAGAAGGTGTGGGGCATGCCCTGCGACGAAATGAGCGCCGACTGGGCCGCGCAGCGCATCAAGGGCCTCTCGCT
CTGGAGCGCGGTGACCGACGGTCTCAAGCGCTCGCTCGGCCTCAACAAGAAGCCCAACGACGGCATGGAAACCAAGACCC
TTCTCGAAACCTTCCGCTACCCGCGGCAGGGCCCGGGCATGATGTGGGAAGCCGCACGCGACAAGATCGTCGCCACCGGC
AAGGGCCAGGTCATCATGGGCTATGGTCTCGAGCAACTCGCTGCCGACGGTGAAGGCGGCTGGCGCATGTCGGCCACCAA
CAAGGATGGCGACAAGGTCGTCGTCAAGGCCGGCCATGCCATCAGCTCTGCCCCGATGCGCGAGCTGGGTGCGCGTTTGC
ACCCGCTGCCCGAAACGAGCTGGAACGGTTCGAACCTCAAGTATCGCGACTTCCTGACTGTCGCCCTGATGGTGGAAGGC
GAAGACCTGTTCCCGGACAACTGGATCTATATCCACGACAGCAAGGTACAGGTCGGCCGCGTTCAGAACTTCCGCAGCTG
GTCGCCCGAGATGATCCCGGACGAGAAAATGGCCTGTGTCGGACTCGAATATTTCTGCTTCGAGGGCGACGGCCTCTGGG
ACATGGCCGATGCCGATTTGGTCGACCTTGCTACCACTGAAATGAAGACGCTCGGCCTGCTCGATCCGGCCAAGGTCAAG
GGCGGCGCGGTTGTGCGGCAGGAAAAGGCGTATCCGGTCTATGACGAGGACTACGCCGCCAATGTCGCTGCCATGCGCGG
CGAGCTGGAGCACAAATATCAGACGCTGCACCTGGTCGGCCGCAACGGCATGCACCGCTACAACAACCAGGACCACGCGA
TGATGACCGCCATGCTGACGGTCGAGAACATCCTCGCCGGCGAGCGCGTCTACGACATCTGGTGCGTCAACGAAGACGCC
GAATATCACGAAGCTGGCGATGAAGGTGCTGAGAAGGCGCTGCCGGCCCGCGAGCAGGTGTCCGAAGACCAAGCCGCCGC
GCTCAACTCGATGCGCGACGTGCCCGAGCGGATCGTCGAAGCGGATGCGGATGAAACCGCCGCCGACCGCCGCGTCGCCT
GA

Upstream 100 bases:

>100_bases
GCCTCGCAGCTGAGCACCGGCGCTTTTCCCGGCGGGCGTTAACACCTCCCTAACCATTTTCCTTCACTCCCCGGTCAACA
GATCACAACCGGGGGCAAAC

Downstream 100 bases:

>100_bases
TGACTGAGGTTGCGAAGGAGACAGCGCCGATGACGGCCCCCCTCAAACATGGGCTCCATCGCCTCAAGGACGTCGTGCTG
GTGCGCTATCTCATTGCCAG

Product: hypothetical protein

Products: UDP-D-galacto-1,4-furanose [C]

Alternate protein names: UDP-Galactopyranose Mutase; FAD Dependent Oxidoreductase; Amine Oxidase Flavin-Containing; Amine Oxidase Flavin-Containing Superfamily; Protoporphyrinogen Oxidase-Like Protein; Flavin Containing Amine Oxidoreductase; Amine Oxidase Family Protein; LOW QUALITY PROTEIN Protoporphyrinogen Oxidase; Oxidoreductase; Glycosyl Transferase Family 2 Protein; FAD-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; FAD-Dependent Oxidoreductase; Oxidase; Protoporphyrinogen Oxidase

Number of amino acids: Translated: 533; Mature: 533

Protein sequence:

>533_residues
MHNATSRELNVDVAIIGAGPAGLTAGYLLTKAGKSVAIIEKDETYVGGISRTVEHEGYRFDIGGHRFFSKSAAVVDLWNE
ILPDDFIQRPRMSRIYYEGKFYSYPLRAFEALSNLGILRSTACMASYLWYKAFPIKTVKSFEDWTTNQFGQKLYSIFFKT
YTEKVWGMPCDEMSADWAAQRIKGLSLWSAVTDGLKRSLGLNKKPNDGMETKTLLETFRYPRQGPGMMWEAARDKIVATG
KGQVIMGYGLEQLAADGEGGWRMSATNKDGDKVVVKAGHAISSAPMRELGARLHPLPETSWNGSNLKYRDFLTVALMVEG
EDLFPDNWIYIHDSKVQVGRVQNFRSWSPEMIPDEKMACVGLEYFCFEGDGLWDMADADLVDLATTEMKTLGLLDPAKVK
GGAVVRQEKAYPVYDEDYAANVAAMRGELEHKYQTLHLVGRNGMHRYNNQDHAMMTAMLTVENILAGERVYDIWCVNEDA
EYHEAGDEGAEKALPAREQVSEDQAAALNSMRDVPERIVEADADETAADRRVA

Sequences:

>Translated_533_residues
MHNATSRELNVDVAIIGAGPAGLTAGYLLTKAGKSVAIIEKDETYVGGISRTVEHEGYRFDIGGHRFFSKSAAVVDLWNE
ILPDDFIQRPRMSRIYYEGKFYSYPLRAFEALSNLGILRSTACMASYLWYKAFPIKTVKSFEDWTTNQFGQKLYSIFFKT
YTEKVWGMPCDEMSADWAAQRIKGLSLWSAVTDGLKRSLGLNKKPNDGMETKTLLETFRYPRQGPGMMWEAARDKIVATG
KGQVIMGYGLEQLAADGEGGWRMSATNKDGDKVVVKAGHAISSAPMRELGARLHPLPETSWNGSNLKYRDFLTVALMVEG
EDLFPDNWIYIHDSKVQVGRVQNFRSWSPEMIPDEKMACVGLEYFCFEGDGLWDMADADLVDLATTEMKTLGLLDPAKVK
GGAVVRQEKAYPVYDEDYAANVAAMRGELEHKYQTLHLVGRNGMHRYNNQDHAMMTAMLTVENILAGERVYDIWCVNEDA
EYHEAGDEGAEKALPAREQVSEDQAAALNSMRDVPERIVEADADETAADRRVA
>Mature_533_residues
MHNATSRELNVDVAIIGAGPAGLTAGYLLTKAGKSVAIIEKDETYVGGISRTVEHEGYRFDIGGHRFFSKSAAVVDLWNE
ILPDDFIQRPRMSRIYYEGKFYSYPLRAFEALSNLGILRSTACMASYLWYKAFPIKTVKSFEDWTTNQFGQKLYSIFFKT
YTEKVWGMPCDEMSADWAAQRIKGLSLWSAVTDGLKRSLGLNKKPNDGMETKTLLETFRYPRQGPGMMWEAARDKIVATG
KGQVIMGYGLEQLAADGEGGWRMSATNKDGDKVVVKAGHAISSAPMRELGARLHPLPETSWNGSNLKYRDFLTVALMVEG
EDLFPDNWIYIHDSKVQVGRVQNFRSWSPEMIPDEKMACVGLEYFCFEGDGLWDMADADLVDLATTEMKTLGLLDPAKVK
GGAVVRQEKAYPVYDEDYAANVAAMRGELEHKYQTLHLVGRNGMHRYNNQDHAMMTAMLTVENILAGERVYDIWCVNEDA
EYHEAGDEGAEKALPAREQVSEDQAAALNSMRDVPERIVEADADETAADRRVA

Specific function: Involved In The Conversion Of UDP-Galp Into UDP-Galf Through A 2-Keto Intermediate. [C]

COG id: COG1232

COG function: function code H; Protoporphyrinogen oxidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI71990307, Length=192, Percent_Identity=27.6041666666667, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 5.4.99.9 [C]

Molecular weight: Translated: 59647; Mature: 59647

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHNATSRELNVDVAIIGAGPAGLTAGYLLTKAGKSVAIIEKDETYVGGISRTVEHEGYRF
CCCCCCCEEEEEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCEECCHHHHHCCCCEEE
DIGGHRFFSKSAAVVDLWNEILPDDFIQRPRMSRIYYEGKFYSYPLRAFEALSNLGILRS
ECCCCCHHCCCHHHHHHHHHHCCHHHHCCCCCCEEEECCEEEECHHHHHHHHHHCCHHHH
TACMASYLWYKAFPIKTVKSFEDWTTNQFGQKLYSIFFKTYTEKVWGMPCDEMSADWAAQ
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
RIKGLSLWSAVTDGLKRSLGLNKKPNDGMETKTLLETFRYPRQGPGMMWEAARDKIVATG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCEEECC
KGQVIMGYGLEQLAADGEGGWRMSATNKDGDKVVVKAGHAISSAPMRELGARLHPLPETS
CCCEEECCCHHHHHCCCCCCEEEECCCCCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCC
WNGSNLKYRDFLTVALMVEGEDLFPDNWIYIHDSKVQVGRVQNFRSWSPEMIPDEKMACV
CCCCCEEEHEEEEEEEEEECCCCCCCCEEEEECCCEEECHHHCCCCCCCCCCCCCCEEEE
GLEYFCFEGDGLWDMADADLVDLATTEMKTLGLLDPAKVKGGAVVRQEKAYPVYDEDYAA
CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHH
NVAAMRGELEHKYQTLHLVGRNGMHRYNNQDHAMMTAMLTVENILAGERVYDIWCVNEDA
HHHHHHHHHHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCC
EYHEAGDEGAEKALPAREQVSEDQAAALNSMRDVPERIVEADADETAADRRVA
HHHHCCCCHHHHCCCCHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MHNATSRELNVDVAIIGAGPAGLTAGYLLTKAGKSVAIIEKDETYVGGISRTVEHEGYRF
CCCCCCCEEEEEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCEECCHHHHHCCCCEEE
DIGGHRFFSKSAAVVDLWNEILPDDFIQRPRMSRIYYEGKFYSYPLRAFEALSNLGILRS
ECCCCCHHCCCHHHHHHHHHHCCHHHHCCCCCCEEEECCEEEECHHHHHHHHHHCCHHHH
TACMASYLWYKAFPIKTVKSFEDWTTNQFGQKLYSIFFKTYTEKVWGMPCDEMSADWAAQ
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
RIKGLSLWSAVTDGLKRSLGLNKKPNDGMETKTLLETFRYPRQGPGMMWEAARDKIVATG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCEEECC
KGQVIMGYGLEQLAADGEGGWRMSATNKDGDKVVVKAGHAISSAPMRELGARLHPLPETS
CCCEEECCCHHHHHCCCCCCEEEECCCCCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCC
WNGSNLKYRDFLTVALMVEGEDLFPDNWIYIHDSKVQVGRVQNFRSWSPEMIPDEKMACV
CCCCCEEEHEEEEEEEEEECCCCCCCCEEEEECCCEEECHHHCCCCCCCCCCCCCCEEEE
GLEYFCFEGDGLWDMADADLVDLATTEMKTLGLLDPAKVKGGAVVRQEKAYPVYDEDYAA
CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHH
NVAAMRGELEHKYQTLHLVGRNGMHRYNNQDHAMMTAMLTVENILAGERVYDIWCVNEDA
HHHHHHHHHHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCC
EYHEAGDEGAEKALPAREQVSEDQAAALNSMRDVPERIVEADADETAADRRVA
HHHHCCCCHHHHCCCCHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: FAD. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: UDPgalactose [C]

Specific reaction: UDPgalactose --> UDP-D-galacto-1,4-furanose [C]

General reaction: Group transfer (intramolecular Isomerization) [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA