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The map label for this gene is yggS [C]

Identifier: 85375194

GI number: 85375194

Start: 2385509

End: 2386171

Strand: Reverse

Name: yggS [C]

Synonym: ELI_11835

Alternate gene names: 85375194

Gene position: 2386171-2385509 (Counterclockwise)

Preceding gene: 85375197

Following gene: 85375190

Centisome position: 78.17

GC content: 63.95

Gene sequence:

>663_bases
ATGAGTGATCCCACTACCCCGCTCGAAGAAACGGAAGCCCGCATCGCCAGGGCCTGCACAATCGCCCAGCGCGACCGCGA
TGAAGTCACGCTGATCGCGGTCAGCAAGACCCATCCGGTGGAGGCGATCGAGCCGCTGCTGGAACAGGGCCACCGCGTCT
TCGGCGAAAACCGCGTGCAGGAAGTGAAGGAAAAATGGCCTGCTTTGCGCGAGGCCTATTCCGATGTCGAACTGCACCTG
ATCGGCCAGCTGCAGTCGAACAAGGCGGAAGACGCCGTCGCGCTGTTCGACTGCATCCATTCGCTCGACCGTCCGAGCCT
GGTGAAGGCGCTCGGCAAGGCGATGGAGAAAGCGGGCAAGCAGGTCCCGTGCTTCCTGCAGGTCAATATCGGCGATGAGG
ACCAGAAGGGCGGCTGCCCGATCGGCGAGGTACCCGCCATGCTGGAGCGGGCGCGCGAGGCGGGCATTCCGGTGGTCGGG
TTGATGTCTATCCCGCCGTTCGACATCGAACCGGCACCCTTCTTTGCGCTGCTCGACAAGCTGGCGCGCGAGAACGAACT
AGAAGCCCGCAGCATGGGGATGAGCAGCGATTTCGAAACCGCCATCATGCTCGGCGCAACGCACGTGCGGGTCGGTACCG
CGCTGTTCGGCGATCGGGGGTAG

Upstream 100 bases:

>100_bases
GTTGCGCTCGTCGGACAGGAGCCAGAGGTCAGGTAAGTCCTTTCGACTACGCTCAAGACAGGTCTGGAAGTGTGCCACGC
GCCCGCTATAGCGCAGCCCC

Downstream 100 bases:

>100_bases
CGCACACGAAAAGGGGCGAGCCGAAGCCCGCCCCTCTCAAATGGTCAATACCGGACCTTACAGCCCCTCGACAGCCTTGC
TGACGAGGATGTTGACCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MSDPTTPLEETEARIARACTIAQRDRDEVTLIAVSKTHPVEAIEPLLEQGHRVFGENRVQEVKEKWPALREAYSDVELHL
IGQLQSNKAEDAVALFDCIHSLDRPSLVKALGKAMEKAGKQVPCFLQVNIGDEDQKGGCPIGEVPAMLERAREAGIPVVG
LMSIPPFDIEPAPFFALLDKLARENELEARSMGMSSDFETAIMLGATHVRVGTALFGDRG

Sequences:

>Translated_220_residues
MSDPTTPLEETEARIARACTIAQRDRDEVTLIAVSKTHPVEAIEPLLEQGHRVFGENRVQEVKEKWPALREAYSDVELHL
IGQLQSNKAEDAVALFDCIHSLDRPSLVKALGKAMEKAGKQVPCFLQVNIGDEDQKGGCPIGEVPAMLERAREAGIPVVG
LMSIPPFDIEPAPFFALLDKLARENELEARSMGMSSDFETAIMLGATHVRVGTALFGDRG
>Mature_219_residues
SDPTTPLEETEARIARACTIAQRDRDEVTLIAVSKTHPVEAIEPLLEQGHRVFGENRVQEVKEKWPALREAYSDVELHLI
GQLQSNKAEDAVALFDCIHSLDRPSLVKALGKAMEKAGKQVPCFLQVNIGDEDQKGGCPIGEVPAMLERAREAGIPVVGL
MSIPPFDIEPAPFFALLDKLARENELEARSMGMSSDFETAIMLGATHVRVGTALFGDRG

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=237, Percent_Identity=31.6455696202532, Blast_Score=100, Evalue=9e-22,
Organism=Escherichia coli, GI1789321, Length=229, Percent_Identity=34.9344978165939, Blast_Score=120, Evalue=8e-29,
Organism=Caenorhabditis elegans, GI17533025, Length=226, Percent_Identity=37.1681415929204, Blast_Score=112, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6319435, Length=215, Percent_Identity=33.4883720930233, Blast_Score=91, Evalue=1e-19,
Organism=Drosophila melanogaster, GI45550861, Length=213, Percent_Identity=34.2723004694836, Blast_Score=102, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24057; Mature: 23926

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDPTTPLEETEARIARACTIAQRDRDEVTLIAVSKTHPVEAIEPLLEQGHRVFGENRVQ
CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCHHHHH
EVKEKWPALREAYSDVELHLIGQLQSNKAEDAVALFDCIHSLDRPSLVKALGKAMEKAGK
HHHHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
QVPCFLQVNIGDEDQKGGCPIGEVPAMLERAREAGIPVVGLMSIPPFDIEPAPFFALLDK
CCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHH
LARENELEARSMGMSSDFETAIMLGATHVRVGTALFGDRG
HHHHCCHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
SDPTTPLEETEARIARACTIAQRDRDEVTLIAVSKTHPVEAIEPLLEQGHRVFGENRVQ
CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCHHHHH
EVKEKWPALREAYSDVELHLIGQLQSNKAEDAVALFDCIHSLDRPSLVKALGKAMEKAGK
HHHHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
QVPCFLQVNIGDEDQKGGCPIGEVPAMLERAREAGIPVVGLMSIPPFDIEPAPFFALLDK
CCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHH
LARENELEARSMGMSSDFETAIMLGATHVRVGTALFGDRG
HHHHCCHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]