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The map label for this gene is ycdC [C]

Identifier: 85375033

GI number: 85375033

Start: 2227773

End: 2228426

Strand: Reverse

Name: ycdC [C]

Synonym: ELI_11030

Alternate gene names: 85375033

Gene position: 2228426-2227773 (Counterclockwise)

Preceding gene: 85375038

Following gene: 85375029

Centisome position: 73.01

GC content: 65.14

Gene sequence:

>654_bases
TTGTCAACACAGTCCAAAGCACGTGGTTCGCAAGGCCGGATCGGTCGCCCGGCCGATGAGGCCAAGCGGGCTGCCATCGT
CAGGGCCGCGGCGGACAGTTTCTTCGATGCGGGCTATGCCGCAACCTCGATCGAGCAGGTCGCCGCCGCTGCGGGCGTGT
CCAAGGTCACCGTCTACAATCACTTCGGCGACAAGCGCGGCCTGTTCACCGCCGCGGTCGAGCGCGAGTGCGAAAAGATG
CGTGGCCACTTCAGCCTCGACGATACCTCGCGTGGCTCGCTCCGCCAGCGATTGCTGGCCATCGGCGAGGCGATGAGCGC
ATTTCTTTCGCGGCCCGAAATGGTCCAGTTCGAACGCCGCATCGCGGCCGAGACCGAGCACGAGCCGGCTGTCGGCGAGG
CCTTTCTCGAGGCCGGCCCGCATCGCATGAAGGCTGCTTTCACGATGCTGATCCAGGCCATGCAGGCAGCCGGAGAAGTC
GAGGTCGAAGACGCGGAACTGGCCGCCGAACAATTCGCCGCCATGTGCAAGGGCATGGGCGATCTCGATCGGCGTTTCGG
GCTGCCCAAGGACGAAGAACGCGACCGGCAGAGAGTGGTCGGCGCGGTCGATGTGTTTTGCGCGGCCTATGCCGCAAAAG
GCTGCGACGACTAG

Upstream 100 bases:

>100_bases
CATAGGGCGGGGGAAACCTCTGCTTTCGGCCGGGGTTGTCGAATCAAGCGCGAGCGGCCATTATTGAACGGTAGCGTTTA
ATTGAACGGGGCCGTTCACT

Downstream 100 bases:

>100_bases
CCGAGCAGGCCTAACGCCACTCCGTAAAGGGTGAACATCGCCGTCGCGTATCCGCCGTCGATCAGCCACAGGCCGAGCGG
ACGGCGCGAGAACAGGTAGT

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator Protein TetR Family; TetR-Type Transcriptional Regulator; TetR-Family Transcriptional Regulator; Transcription Regulator Protein; Transcriptional Regulator Protein; Regulatory Protein TetR; TetR Family Regulatory Protein; Transcriptional Regulator TetR

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MSTQSKARGSQGRIGRPADEAKRAAIVRAAADSFFDAGYAATSIEQVAAAAGVSKVTVYNHFGDKRGLFTAAVERECEKM
RGHFSLDDTSRGSLRQRLLAIGEAMSAFLSRPEMVQFERRIAAETEHEPAVGEAFLEAGPHRMKAAFTMLIQAMQAAGEV
EVEDAELAAEQFAAMCKGMGDLDRRFGLPKDEERDRQRVVGAVDVFCAAYAAKGCDD

Sequences:

>Translated_217_residues
MSTQSKARGSQGRIGRPADEAKRAAIVRAAADSFFDAGYAATSIEQVAAAAGVSKVTVYNHFGDKRGLFTAAVERECEKM
RGHFSLDDTSRGSLRQRLLAIGEAMSAFLSRPEMVQFERRIAAETEHEPAVGEAFLEAGPHRMKAAFTMLIQAMQAAGEV
EVEDAELAAEQFAAMCKGMGDLDRRFGLPKDEERDRQRVVGAVDVFCAAYAAKGCDD
>Mature_216_residues
STQSKARGSQGRIGRPADEAKRAAIVRAAADSFFDAGYAATSIEQVAAAAGVSKVTVYNHFGDKRGLFTAAVERECEKMR
GHFSLDDTSRGSLRQRLLAIGEAMSAFLSRPEMVQFERRIAAETEHEPAVGEAFLEAGPHRMKAAFTMLIQAMQAAGEVE
VEDAELAAEQFAAMCKGMGDLDRRFGLPKDEERDRQRVVGAVDVFCAAYAAKGCDD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23487; Mature: 23356

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTQSKARGSQGRIGRPADEAKRAAIVRAAADSFFDAGYAATSIEQVAAAAGVSKVTVYN
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHEEEEH
HFGDKRGLFTAAVERECEKMRGHFSLDDTSRGSLRQRLLAIGEAMSAFLSRPEMVQFERR
HCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
IAAETEHEPAVGEAFLEAGPHRMKAAFTMLIQAMQAAGEVEVEDAELAAEQFAAMCKGMG
HHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
DLDRRFGLPKDEERDRQRVVGAVDVFCAAYAAKGCDD
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
STQSKARGSQGRIGRPADEAKRAAIVRAAADSFFDAGYAATSIEQVAAAAGVSKVTVYN
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHEEEEH
HFGDKRGLFTAAVERECEKMRGHFSLDDTSRGSLRQRLLAIGEAMSAFLSRPEMVQFERR
HCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
IAAETEHEPAVGEAFLEAGPHRMKAAFTMLIQAMQAAGEVEVEDAELAAEQFAAMCKGMG
HHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
DLDRRFGLPKDEERDRQRVVGAVDVFCAAYAAKGCDD
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA