Click here to switch to the map view.

The map label for this gene is ytfH [C]

Identifier: 85375009

GI number: 85375009

Start: 2208872

End: 2209429

Strand: Reverse

Name: ytfH [C]

Synonym: ELI_10910

Alternate gene names: 85375009

Gene position: 2209429-2208872 (Counterclockwise)

Preceding gene: 85375011

Following gene: 85375008

Centisome position: 72.38

GC content: 65.05

Gene sequence:

>558_bases
ATGGGTGGCGAAGTCAGAGAACCTCTACGCGAGCTGCAGGAATGCGGCCTGCCGGAGGCGCTGGAAGTGATGGGCGAGCG
CTGGAGCTTCATGATCCTGCGCGCGAGCTTCAACGGCCTGCATCACTTCGAGGAATTTCTCAACGAGCTCGGCATTGCCC
GCAACATCCTCTCGAACCGCCTCAGCCGGCTGGTCGAGCATGGTATCCTCGATCGTGAGCCGCACCCGGACGATCGCCGC
CGGATCGAATATCGCCTGACCGAAAAGGGCTTCGACCTTCTGCCCGCCATGCTGGCGCTGCGCCAGTGGGGCCAGAAATA
TGGCGAGGATTTCGTCACCACCGATCCTGTGCTCGTCGACGAGCGCGATCGGCTGCCGGTCGGCCCGGTCGCGATCCTCA
GCCACGATGGTCGCCTGCTCGGCCCGGCGGACCTCAACATGGTTGCCCGCAAGGATCTACCCGCCGACAAGCGCGACTGG
CAGGAAGGCCAGCTCCCCAATGCGCGTACGGCCTGGGTCGATGAGGATGAGGGCGGAGCCGCCGTCGCCGCCGAATAG

Upstream 100 bases:

>100_bases
TACCTAATCCACTAGGTTTTAGGTTGCAACTGAAAACTGATATTAAATTGGTGACCGCGCGAATTCCCGTTAGAACGGTT
GCCGGGAAAGGACTGAATGT

Downstream 100 bases:

>100_bases
GCTTGGCTGAGAAGCCCGCAGAGGATCGCAAGCCCGTCGAGCGCACCCCCGACGGCCGCTACATCATCGTAAATGGCCGC
CTCTGGCGCGCCACCAATCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MGGEVREPLRELQECGLPEALEVMGERWSFMILRASFNGLHHFEEFLNELGIARNILSNRLSRLVEHGILDREPHPDDRR
RIEYRLTEKGFDLLPAMLALRQWGQKYGEDFVTTDPVLVDERDRLPVGPVAILSHDGRLLGPADLNMVARKDLPADKRDW
QEGQLPNARTAWVDEDEGGAAVAAE

Sequences:

>Translated_185_residues
MGGEVREPLRELQECGLPEALEVMGERWSFMILRASFNGLHHFEEFLNELGIARNILSNRLSRLVEHGILDREPHPDDRR
RIEYRLTEKGFDLLPAMLALRQWGQKYGEDFVTTDPVLVDERDRLPVGPVAILSHDGRLLGPADLNMVARKDLPADKRDW
QEGQLPNARTAWVDEDEGGAAVAAE
>Mature_184_residues
GGEVREPLRELQECGLPEALEVMGERWSFMILRASFNGLHHFEEFLNELGIARNILSNRLSRLVEHGILDREPHPDDRRR
IEYRLTEKGFDLLPAMLALRQWGQKYGEDFVTTDPVLVDERDRLPVGPVAILSHDGRLLGPADLNMVARKDLPADKRDWQ
EGQLPNARTAWVDEDEGGAAVAAE

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 21017; Mature: 20886

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGEVREPLRELQECGLPEALEVMGERWSFMILRASFNGLHHFEEFLNELGIARNILSNR
CCCHHHHHHHHHHHCCCCHHHHHHHCCHHEEEEEHHHCHHHHHHHHHHHHHHHHHHHHHH
LSRLVEHGILDREPHPDDRRRIEYRLTEKGFDLLPAMLALRQWGQKYGEDFVTTDPVLVD
HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEC
ERDRLPVGPVAILSHDGRLLGPADLNMVARKDLPADKRDWQEGQLPNARTAWVDEDEGGA
CCCCCCCCCEEEEECCCCEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
AVAAE
EECCC
>Mature Secondary Structure 
GGEVREPLRELQECGLPEALEVMGERWSFMILRASFNGLHHFEEFLNELGIARNILSNR
CCHHHHHHHHHHHCCCCHHHHHHHCCHHEEEEEHHHCHHHHHHHHHHHHHHHHHHHHHH
LSRLVEHGILDREPHPDDRRRIEYRLTEKGFDLLPAMLALRQWGQKYGEDFVTTDPVLVD
HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEC
ERDRLPVGPVAILSHDGRLLGPADLNMVARKDLPADKRDWQEGQLPNARTAWVDEDEGGA
CCCCCCCCCEEEEECCCCEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
AVAAE
EECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]