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The map label for this gene is ycjD [H]

Identifier: 85374212

GI number: 85374212

Start: 1435983

End: 1436417

Strand: Reverse

Name: ycjD [H]

Synonym: ELI_06925

Alternate gene names: 85374212

Gene position: 1436417-1435983 (Counterclockwise)

Preceding gene: 85374213

Following gene: 85374211

Centisome position: 47.06

GC content: 61.38

Gene sequence:

>435_bases
ATGATCACAGGCACGCGCGACTCTGTGAAACTCGCCCGTAAGATGCGTAGCGAGATGACGCTGCCGGAGGGCAAGTTGTG
GATAGAGCTGCGCAAGCGCCCCGGCGGATACAAGTTTCGGCGACAGCATCCGGCGGGACAATTTGTGCTCGACTTCTATT
GCGCGGCAGCCCGGCTGGCCATCGAGGTCGATGGGCAGGCCCATGATTGTGAGGCCGTGGTTGATCGAGACAAGCGGCGC
TCGGCTTGGCTTCGGGACCGCGGGATAGCAATGACCCGGATACCGGCGCGACTAATACTGCAGGATATTGAGGCAGTTGT
GACGCGCTTGGTCGAGATTTGCGATGCCAGGCGAGTGGAATTGAAGCGGAAAGCTCGCGCGCCCCTCCACCATCCTGCGG
ATGGTCCCCCTCCCCAGATCGGGGAAGAAGGGTGA

Upstream 100 bases:

>100_bases
TGGGTCACGCCCGAAGGCGGCGGCGGGCCGAACTATCCGAATATGTGATCTTCCTCCCCGAAACGGGGAGGGGGACCACG
AAGTGGTGGAGGGGCGAGCC

Downstream 100 bases:

>100_bases
TTACCGAAACCGCCTACGCAAAGATCAACCTTGCGCTGCACGTCCGCAGCAAGCGCGAGGATGGCTACCACGAGATCGAA
ACGCTGTTCGCCTTCGTCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MITGTRDSVKLARKMRSEMTLPEGKLWIELRKRPGGYKFRRQHPAGQFVLDFYCAAARLAIEVDGQAHDCEAVVDRDKRR
SAWLRDRGIAMTRIPARLILQDIEAVVTRLVEICDARRVELKRKARAPLHHPADGPPPQIGEEG

Sequences:

>Translated_144_residues
MITGTRDSVKLARKMRSEMTLPEGKLWIELRKRPGGYKFRRQHPAGQFVLDFYCAAARLAIEVDGQAHDCEAVVDRDKRR
SAWLRDRGIAMTRIPARLILQDIEAVVTRLVEICDARRVELKRKARAPLHHPADGPPPQIGEEG
>Mature_144_residues
MITGTRDSVKLARKMRSEMTLPEGKLWIELRKRPGGYKFRRQHPAGQFVLDFYCAAARLAIEVDGQAHDCEAVVDRDKRR
SAWLRDRGIAMTRIPARLILQDIEAVVTRLVEICDARRVELKRKARAPLHHPADGPPPQIGEEG

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=118, Percent_Identity=38.9830508474576, Blast_Score=84, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 16390; Mature: 16390

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITGTRDSVKLARKMRSEMTLPEGKLWIELRKRPGGYKFRRQHPAGQFVLDFYCAAARLA
CCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHEE
IEVDGQAHDCEAVVDRDKRRSAWLRDRGIAMTRIPARLILQDIEAVVTRLVEICDARRVE
EEECCCCCCHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LKRKARAPLHHPADGPPPQIGEEG
HHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MITGTRDSVKLARKMRSEMTLPEGKLWIELRKRPGGYKFRRQHPAGQFVLDFYCAAARLA
CCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHEE
IEVDGQAHDCEAVVDRDKRRSAWLRDRGIAMTRIPARLILQDIEAVVTRLVEICDARRVE
EEECCCCCCHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LKRKARAPLHHPADGPPPQIGEEG
HHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]