Click here to switch to the map view.

The map label for this gene is yfbS [C]

Identifier: 85373883

GI number: 85373883

Start: 1090185

End: 1091999

Strand: Direct

Name: yfbS [C]

Synonym: ELI_05280

Alternate gene names: 85373883

Gene position: 1090185-1091999 (Clockwise)

Preceding gene: 85373882

Following gene: 85373884

Centisome position: 35.72

GC content: 60.55

Gene sequence:

>1815_bases
ATGATCGCCGCACCCTCTTTCCATGCGATAGCTGCCATAGCCGTGACGATCGCGATGTTCGTCGGCTTCATCCGCGGGCG
CCTTTCGATAGAGATCGTCTCGCTGCTGACCATCGCGGTGATTGCGGTGGGGCTCTATTTCTTTCCCATCGAAGGCACAG
ATCCGACAGACGGTATCGTGCTCGCATTCTCCGGCTTCGGTCATTACGCACTGATTACCATTTGTGCGCTGATGATCATG
GGGCGGGGCTTGGTCGTGACCGGTGCGCTGGAACCAGCCGCGCGATTTCTAGAGCGGGTGTTTAAGTGGAACATTCAGCT
TGGCCTGCTGTTTTCGCTGCTGATCGCCTTCGTGCTGTCGATGGGCGTCAACAACACACCGGTGCTGGTGTTGCTGATCC
CGATCTTTGTGACGCTCGCGGCGCGCGGTGCGCTGCCCGCTTCCAAGACGCTGATTCCGCTCAACGCCGCTTCGCTGATC
GGCGGTCTGGCGACGACCATCGGCACTTCGACCAATATCCTCGTCGTTTCGATCGCGGTCGACCTCGGCATGGACCGTAT
GGGGGTGTTCCATTTCACGCCCATCGTGCTGGTCGCCGGTGCACTGGCGCTTCCATACCTGTGGCTCGTGATGCCACGCA
TGCTGAAGGACAATCGCACCACCGAATTTCAGCAGCAACGGAAATTCTATTCGCGTTTGCGCGTGGGCGACGAATCCAAG
CTCGTCGGCGAGAAAATCGCCGATATCTTGCCGCGCCTGCCGGAAGGGATCACCTTTCACGACAAGACCGACGGTACGAT
CACCGCGCAAGAGCGGCTGCTGATATCCGGCACGCACGAAGCGCTGGAGGAGGCCATGCGCGAGATCGGCGGCGAAGTTG
CGCCGATCTGGGTCATCGACAAGATCCGCCGCAAGTCGCGCGAGCTGGGGCAGGATATCAATGTCGTCGAAATGACCGTG
ACGGCGGATTCGCGCCTGCTCAACCGGACCTTGCCGACATCGGGCGTGGCCGACCTGTTCGGCGTCGCCGTGCTCGGCAT
CCATCGCCCCGACACCGTAATCGGCGACAAGGACAAATACAGTTCCGGCGGCGACCTGCGCATCAACGAAGGCGACGTGC
TGTTGGTCATGGGCCTGATCGACGACGTGCAGGAATTTGCGCGATCGGACAGCCTGTTGCAGCTCGAGGGTGCACGCGAA
TTGCCGCGTCGGTCTAAGGCACTTCTCGCCGCCATCATCATGGGCATTTCCGTCGGTCTCGCCTCGCTCGGCATTTTCCC
CATCGCCATCGCTGCGCTGGGCGGCGCAATCCTGATGTTCGTGACCGGCTGCGTTAAATTCGACCGTGTCGGCAAGGCGT
TGTCCGGCCAGGTCATCGTGCTGGTCGCGGCCTCCATTGCGATCGGTCGCTTGATTGACGAGAGCGGCGCGGCCGACTGG
TTGGGACAATTGCTGTCGTTGGCAATCGCTTTCGACGGGCCGGCGAATATCCAGCTCGCCATCACCATCGCCGTCATCAT
GCTTTTCATGACAGTGCTGACCAATTTCGCGTCGAATGCGACCGCGGCGACAGTCGGCACCCCTATCGCATTTGCCATTT
CCAATCAGCTTGGCCTGCCGCCGGAGCCGCTGGTGCTGGCGGTGCTGTTCGGCTGCAACCTGTGCTACGCGACGCCGATC
GCCTATCAGACCAATATGCTGATCATGGCCGAGGGGTCGTACAATTTCCAGGATTACGTCCGCACAGGCGTGCCGCTCGT
TGCGATCATGGTAACTACGCTCACGGCGTTGCTTGTGCTGACTTACGGGATGTGA

Upstream 100 bases:

>100_bases
AAAACCAGCTAGGTGGGGAGGTGCCTGCATTCCCGGGCACCTCCCGTTACGAATAGCGATTGCTTAGTAACGCGGTAGTT
CGCTATCGCCTGCGGCAAGG

Downstream 100 bases:

>100_bases
CGCGCAGCGAGGGTGGCTTCCCTGCCGCGCAAGGACATGGCAGAGTGCAGTCCATTCGGGGCGGCACCTTCCGGCGGTTC
ACTGGAGTGGCGCTGCCAAC

Product: putative transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 604; Mature: 604

Protein sequence:

>604_residues
MIAAPSFHAIAAIAVTIAMFVGFIRGRLSIEIVSLLTIAVIAVGLYFFPIEGTDPTDGIVLAFSGFGHYALITICALMIM
GRGLVVTGALEPAARFLERVFKWNIQLGLLFSLLIAFVLSMGVNNTPVLVLLIPIFVTLAARGALPASKTLIPLNAASLI
GGLATTIGTSTNILVVSIAVDLGMDRMGVFHFTPIVLVAGALALPYLWLVMPRMLKDNRTTEFQQQRKFYSRLRVGDESK
LVGEKIADILPRLPEGITFHDKTDGTITAQERLLISGTHEALEEAMREIGGEVAPIWVIDKIRRKSRELGQDINVVEMTV
TADSRLLNRTLPTSGVADLFGVAVLGIHRPDTVIGDKDKYSSGGDLRINEGDVLLVMGLIDDVQEFARSDSLLQLEGARE
LPRRSKALLAAIIMGISVGLASLGIFPIAIAALGGAILMFVTGCVKFDRVGKALSGQVIVLVAASIAIGRLIDESGAADW
LGQLLSLAIAFDGPANIQLAITIAVIMLFMTVLTNFASNATAATVGTPIAFAISNQLGLPPEPLVLAVLFGCNLCYATPI
AYQTNMLIMAEGSYNFQDYVRTGVPLVAIMVTTLTALLVLTYGM

Sequences:

>Translated_604_residues
MIAAPSFHAIAAIAVTIAMFVGFIRGRLSIEIVSLLTIAVIAVGLYFFPIEGTDPTDGIVLAFSGFGHYALITICALMIM
GRGLVVTGALEPAARFLERVFKWNIQLGLLFSLLIAFVLSMGVNNTPVLVLLIPIFVTLAARGALPASKTLIPLNAASLI
GGLATTIGTSTNILVVSIAVDLGMDRMGVFHFTPIVLVAGALALPYLWLVMPRMLKDNRTTEFQQQRKFYSRLRVGDESK
LVGEKIADILPRLPEGITFHDKTDGTITAQERLLISGTHEALEEAMREIGGEVAPIWVIDKIRRKSRELGQDINVVEMTV
TADSRLLNRTLPTSGVADLFGVAVLGIHRPDTVIGDKDKYSSGGDLRINEGDVLLVMGLIDDVQEFARSDSLLQLEGARE
LPRRSKALLAAIIMGISVGLASLGIFPIAIAALGGAILMFVTGCVKFDRVGKALSGQVIVLVAASIAIGRLIDESGAADW
LGQLLSLAIAFDGPANIQLAITIAVIMLFMTVLTNFASNATAATVGTPIAFAISNQLGLPPEPLVLAVLFGCNLCYATPI
AYQTNMLIMAEGSYNFQDYVRTGVPLVAIMVTTLTALLVLTYGM
>Mature_604_residues
MIAAPSFHAIAAIAVTIAMFVGFIRGRLSIEIVSLLTIAVIAVGLYFFPIEGTDPTDGIVLAFSGFGHYALITICALMIM
GRGLVVTGALEPAARFLERVFKWNIQLGLLFSLLIAFVLSMGVNNTPVLVLLIPIFVTLAARGALPASKTLIPLNAASLI
GGLATTIGTSTNILVVSIAVDLGMDRMGVFHFTPIVLVAGALALPYLWLVMPRMLKDNRTTEFQQQRKFYSRLRVGDESK
LVGEKIADILPRLPEGITFHDKTDGTITAQERLLISGTHEALEEAMREIGGEVAPIWVIDKIRRKSRELGQDINVVEMTV
TADSRLLNRTLPTSGVADLFGVAVLGIHRPDTVIGDKDKYSSGGDLRINEGDVLLVMGLIDDVQEFARSDSLLQLEGARE
LPRRSKALLAAIIMGISVGLASLGIFPIAIAALGGAILMFVTGCVKFDRVGKALSGQVIVLVAASIAIGRLIDESGAADW
LGQLLSLAIAFDGPANIQLAITIAVIMLFMTVLTNFASNATAATVGTPIAFAISNQLGLPPEPLVLAVLFGCNLCYATPI
AYQTNMLIMAEGSYNFQDYVRTGVPLVAIMVTTLTALLVLTYGM

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 RCK C-terminal domains [H]

Homologues:

Organism=Escherichia coli, GI1788629, Length=631, Percent_Identity=23.7717908082409, Blast_Score=118, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001898
- InterPro:   IPR006037 [H]

Pfam domain/function: PF00939 Na_sulph_symp; PF02080 TrkA_C [H]

EC number: NA

Molecular weight: Translated: 64390; Mature: 64390

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAAPSFHAIAAIAVTIAMFVGFIRGRLSIEIVSLLTIAVIAVGLYFFPIEGTDPTDGIV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCEE
LAFSGFGHYALITICALMIMGRGLVVTGALEPAARFLERVFKWNIQLGLLFSLLIAFVLS
EEECCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
MGVNNTPVLVLLIPIFVTLAARGALPASKTLIPLNAASLIGGLATTIGTSTNILVVSIAV
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEEEEEE
DLGMDRMGVFHFTPIVLVAGALALPYLWLVMPRMLKDNRTTEFQQQRKFYSRLRVGDESK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHH
LVGEKIADILPRLPEGITFHDKTDGTITAQERLLISGTHEALEEAMREIGGEVAPIWVID
HHHHHHHHHHHCCCCCCEEECCCCCEEEECCEEEEECCHHHHHHHHHHHCCCEEEHHHHH
KIRRKSRELGQDINVVEMTVTADSRLLNRTLPTSGVADLFGVAVLGIHRPDTVIGDKDKY
HHHHHHHHHCCCCCEEEEEEECCHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
SSGGDLRINEGDVLLVMGLIDDVQEFARSDSLLQLEGARELPRRSKALLAAIIMGISVGL
CCCCCEEECCCCEEEEHHHHHHHHHHHCCCCEEEECCCHHCHHHHHHHHHHHHHHHHHHH
ASLGIFPIAIAALGGAILMFVTGCVKFDRVGKALSGQVIVLVAASIAIGRLIDESGAADW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCEEEEEHHHHHHHHHHHCCCCHHH
LGQLLSLAIAFDGPANIQLAITIAVIMLFMTVLTNFASNATAATVGTPIAFAISNQLGLP
HHHHHHHHHEECCCCCEEHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEECCCCCCC
PEPLVLAVLFGCNLCYATPIAYQTNMLIMAEGSYNFQDYVRTGVPLVAIMVTTLTALLVL
CHHHHHHHHHHCCHHHCCCCEEECCEEEEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHH
TYGM
HCCC
>Mature Secondary Structure
MIAAPSFHAIAAIAVTIAMFVGFIRGRLSIEIVSLLTIAVIAVGLYFFPIEGTDPTDGIV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCEE
LAFSGFGHYALITICALMIMGRGLVVTGALEPAARFLERVFKWNIQLGLLFSLLIAFVLS
EEECCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
MGVNNTPVLVLLIPIFVTLAARGALPASKTLIPLNAASLIGGLATTIGTSTNILVVSIAV
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEEEEEE
DLGMDRMGVFHFTPIVLVAGALALPYLWLVMPRMLKDNRTTEFQQQRKFYSRLRVGDESK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHH
LVGEKIADILPRLPEGITFHDKTDGTITAQERLLISGTHEALEEAMREIGGEVAPIWVID
HHHHHHHHHHHCCCCCCEEECCCCCEEEECCEEEEECCHHHHHHHHHHHCCCEEEHHHHH
KIRRKSRELGQDINVVEMTVTADSRLLNRTLPTSGVADLFGVAVLGIHRPDTVIGDKDKY
HHHHHHHHHCCCCCEEEEEEECCHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
SSGGDLRINEGDVLLVMGLIDDVQEFARSDSLLQLEGARELPRRSKALLAAIIMGISVGL
CCCCCEEECCCCEEEEHHHHHHHHHHHCCCCEEEECCCHHCHHHHHHHHHHHHHHHHHHH
ASLGIFPIAIAALGGAILMFVTGCVKFDRVGKALSGQVIVLVAASIAIGRLIDESGAADW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCEEEEEHHHHHHHHHHHCCCCHHH
LGQLLSLAIAFDGPANIQLAITIAVIMLFMTVLTNFASNATAATVGTPIAFAISNQLGLP
HHHHHHHHHEECCCCCEEHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEECCCCCCC
PEPLVLAVLFGCNLCYATPIAYQTNMLIMAEGSYNFQDYVRTGVPLVAIMVTTLTALLVL
CHHHHHHHHHHCCHHHCCCCEEECCEEEEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHH
TYGM
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]