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The map label for this gene is yddU [C]

Identifier: 85373779

GI number: 85373779

Start: 983503

End: 985716

Strand: Reverse

Name: yddU [C]

Synonym: ELI_04760

Alternate gene names: 85373779

Gene position: 985716-983503 (Counterclockwise)

Preceding gene: 85373780

Following gene: 85373778

Centisome position: 32.29

GC content: 62.69

Gene sequence:

>2214_bases
ATGTCAGTCCGCAGTTTGTTCCAGGGCCGCTCGTCGGGTTCAGACGCAAGCTCGGCTGCGAACGACGCTGGCGTCATCGG
GCCCGGCGACACCAGGCGTCGCTTGCAGGTCCTCGAAGATATCGAGCAATCCGGCATCGGATGGATCTGGGCCAGCGATG
CCGACGGGCGGCTGATCTACCTTACCGAGGGTGCCTGCCAGCATCTGGATCGCGGCCCGGAAGAATTGCTGGGGACGCCG
CTCGTCGAGCTGTTCGAGACCGATCCCGACGATCCCGACGGCGGCACTTCGCGCCCGCTCAATTTCCAGCTCAAGGCGCA
TAACAAGCTCAAGGACCTCACTGTCCGTTTCGCGCTGCGAAAGTCCGCCAGCGACGTGAAACAGACGTGGTGGTCATTGA
CCGCGCATCCCAAATTCGATGGCTCCGGCAATTTCTGTGGCTATCGCGGCAATGCGAAAGACATCACGGTCGAATACGAG
CGCAAGCTGGTCGACACCAAGCTTGCCGAATACGACTCGCTGACCGGTCTCGCCAACCGCCACTACATGAACAAGCGGCT
GGAGAATATCCTCGCTGCCTACAAGACCGCCAAGCGGTCCTGCGCGCTGATGATGCTGGACCTCGACAAGTTCAAGCAGG
TCAACGACACGATGGGCCACCCGGCCGGCGATGCCGTGCTGGTGCAGGCCTCCGAACGGCTGCGCGCCATCATCGGCGAT
CGCGGCGAGATCGGGCGGCTCGGCGGTGACGAATTCCAGGTCATCCTCCCCGATATCGACGATCGCGGCACGCTCGGGGA
AATTGCCGAGAAGATCATCAAGATCGTCTCCCAGCCCTACCCCGTCGAAGACGACAAGCGCGCCATCATCGGCACCTCTG
TCGGCATCGCCATCGCGCCCTATGACGGGGTCGAGAAGGAAGAACTGGTCAAGGGTTCGGACCTCGCGCTCTACGCCGCC
AAGAACGGCGGGCGCGGCCAGTTCCGTTTCTACCACGCCGATCTGAAGGACGAAGAGCAGGAACGGCAGGCGTTGCTCGA
CGACCTTAGGCAGGCTCTCGCGGCCGGCGAGCTCCAGCTCAATTACCAGCCGGTCGTGCGCGCGGACGACAACCAGGTGG
TCTGTCTCGAAGCGCTGATGCGCTGGCACCACGAAGAACGCGGGTCCGTCAGCCCGGACGTTTTCATTCCGGTCGCGGAA
GAATCGGACCTGATCATCCAGATGGGCGAATGGGCGCTGCGCCAGGCCTGCGAGGATGCGCTCCAGTGGCCGAAATCGGT
GCGCGTTGCGGTCAATGTTTCGGCCGTGCAGTTCGCCAGCAAGAGTTTCCCCGAAACCGTCGCCAACGTGCTTGCACATA
CCGGGATCGACGCCGACCGGCTCGAGCTGGAGCTGACCGAAAGCGTCTTTTTGGGCGATACCGACGCGACGGAAGAGACT
TTCAAGATGCTCAAGAGCCTCGGCGTCAGGCTGGCGCTCGACGATTTCGGCACCGGCTACTCCTCGCTCAGCTACCTGCG
CTCCGCTCCGTTCGACAAGATCAAGGTCGATCGCAGTTTCGTCGATTCCTGTACCGAGCAGGAAAAGAACAGCGCCAAGA
TTATCGCCGCCATCGTGGGCCTCTCCAACGCGCTCGGCATGGAAACGACCGTCGAAGGCGTGGAAGCGTTCGACCAGCTC
GAGATTGTGCGCTCCAAGGGTGCCAAGCTGATCCAGGGCTGGCTCTATGCTCGGGCCATGGCGCAGGAAACGATCCTGCA
GATGATGGCTTCCGGCGAGTTCAAGATCGAGCCCGACGGGCCCGACATGCACCGCCGCGAGCGTCGCAGCGTTTTCCGCA
GGATCGGGATCATCCACGGCGACCATCATTACCGCGCCGTCATGCGCGATCTCTCCACCACCGGGGCACGGATCGAAGGA
CTTGTCGGCGTACCAAAGGGGACTGCGTTGGTGCTGGACCTCGGGGCCGGACAGCTGGTCGTGTGCGAAGTCACCCGCAG
CAAGGAAGCGATGATCGGTGTTGAATTCGAAACCCCGCTGGTCAGCGACGGCGCCGGCGGCCTCGTCACGCGACACCGCG
TGTCGCCCTATGCGCTGGCTGCTGCCGGCATGCCGCTGACCGCACTGCCCGATGGATCCTACCCGATGGAACAGTTGCAC
GGCGTCCCGAAAGGCAAACCGCAATTTCTCGAAGTAATCGTCGGCAACAGGTAG

Upstream 100 bases:

>100_bases
CCCCCCTGTGATACGGGCCGTTTCTTAGCCCGATGGTAACCATTTTTCACGTAATACTACCTTCTCCAGAGACAGTTGCT
GTCCGTGAAGGCGAGGAAAT

Downstream 100 bases:

>100_bases
TTCACAGCCCTCGCGGCACCATTGCAATTGCTGTGCGTTGCAGCAATATGTTGGATATGGGACAAGATCGGCCGATCGAT
GGAAGTGGGGCACCCGGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 737; Mature: 736

Protein sequence:

>737_residues
MSVRSLFQGRSSGSDASSAANDAGVIGPGDTRRRLQVLEDIEQSGIGWIWASDADGRLIYLTEGACQHLDRGPEELLGTP
LVELFETDPDDPDGGTSRPLNFQLKAHNKLKDLTVRFALRKSASDVKQTWWSLTAHPKFDGSGNFCGYRGNAKDITVEYE
RKLVDTKLAEYDSLTGLANRHYMNKRLENILAAYKTAKRSCALMMLDLDKFKQVNDTMGHPAGDAVLVQASERLRAIIGD
RGEIGRLGGDEFQVILPDIDDRGTLGEIAEKIIKIVSQPYPVEDDKRAIIGTSVGIAIAPYDGVEKEELVKGSDLALYAA
KNGGRGQFRFYHADLKDEEQERQALLDDLRQALAAGELQLNYQPVVRADDNQVVCLEALMRWHHEERGSVSPDVFIPVAE
ESDLIIQMGEWALRQACEDALQWPKSVRVAVNVSAVQFASKSFPETVANVLAHTGIDADRLELELTESVFLGDTDATEET
FKMLKSLGVRLALDDFGTGYSSLSYLRSAPFDKIKVDRSFVDSCTEQEKNSAKIIAAIVGLSNALGMETTVEGVEAFDQL
EIVRSKGAKLIQGWLYARAMAQETILQMMASGEFKIEPDGPDMHRRERRSVFRRIGIIHGDHHYRAVMRDLSTTGARIEG
LVGVPKGTALVLDLGAGQLVVCEVTRSKEAMIGVEFETPLVSDGAGGLVTRHRVSPYALAAAGMPLTALPDGSYPMEQLH
GVPKGKPQFLEVIVGNR

Sequences:

>Translated_737_residues
MSVRSLFQGRSSGSDASSAANDAGVIGPGDTRRRLQVLEDIEQSGIGWIWASDADGRLIYLTEGACQHLDRGPEELLGTP
LVELFETDPDDPDGGTSRPLNFQLKAHNKLKDLTVRFALRKSASDVKQTWWSLTAHPKFDGSGNFCGYRGNAKDITVEYE
RKLVDTKLAEYDSLTGLANRHYMNKRLENILAAYKTAKRSCALMMLDLDKFKQVNDTMGHPAGDAVLVQASERLRAIIGD
RGEIGRLGGDEFQVILPDIDDRGTLGEIAEKIIKIVSQPYPVEDDKRAIIGTSVGIAIAPYDGVEKEELVKGSDLALYAA
KNGGRGQFRFYHADLKDEEQERQALLDDLRQALAAGELQLNYQPVVRADDNQVVCLEALMRWHHEERGSVSPDVFIPVAE
ESDLIIQMGEWALRQACEDALQWPKSVRVAVNVSAVQFASKSFPETVANVLAHTGIDADRLELELTESVFLGDTDATEET
FKMLKSLGVRLALDDFGTGYSSLSYLRSAPFDKIKVDRSFVDSCTEQEKNSAKIIAAIVGLSNALGMETTVEGVEAFDQL
EIVRSKGAKLIQGWLYARAMAQETILQMMASGEFKIEPDGPDMHRRERRSVFRRIGIIHGDHHYRAVMRDLSTTGARIEG
LVGVPKGTALVLDLGAGQLVVCEVTRSKEAMIGVEFETPLVSDGAGGLVTRHRVSPYALAAAGMPLTALPDGSYPMEQLH
GVPKGKPQFLEVIVGNR
>Mature_736_residues
SVRSLFQGRSSGSDASSAANDAGVIGPGDTRRRLQVLEDIEQSGIGWIWASDADGRLIYLTEGACQHLDRGPEELLGTPL
VELFETDPDDPDGGTSRPLNFQLKAHNKLKDLTVRFALRKSASDVKQTWWSLTAHPKFDGSGNFCGYRGNAKDITVEYER
KLVDTKLAEYDSLTGLANRHYMNKRLENILAAYKTAKRSCALMMLDLDKFKQVNDTMGHPAGDAVLVQASERLRAIIGDR
GEIGRLGGDEFQVILPDIDDRGTLGEIAEKIIKIVSQPYPVEDDKRAIIGTSVGIAIAPYDGVEKEELVKGSDLALYAAK
NGGRGQFRFYHADLKDEEQERQALLDDLRQALAAGELQLNYQPVVRADDNQVVCLEALMRWHHEERGSVSPDVFIPVAEE
SDLIIQMGEWALRQACEDALQWPKSVRVAVNVSAVQFASKSFPETVANVLAHTGIDADRLELELTESVFLGDTDATEETF
KMLKSLGVRLALDDFGTGYSSLSYLRSAPFDKIKVDRSFVDSCTEQEKNSAKIIAAIVGLSNALGMETTVEGVEAFDQLE
IVRSKGAKLIQGWLYARAMAQETILQMMASGEFKIEPDGPDMHRRERRSVFRRIGIIHGDHHYRAVMRDLSTTGARIEGL
VGVPKGTALVLDLGAGQLVVCEVTRSKEAMIGVEFETPLVSDGAGGLVTRHRVSPYALAAAGMPLTALPDGSYPMEQLHG
VPKGKPQFLEVIVGNR

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=431, Percent_Identity=31.7865429234339, Blast_Score=228, Evalue=1e-60,
Organism=Escherichia coli, GI1787541, Length=430, Percent_Identity=33.953488372093, Blast_Score=225, Evalue=9e-60,
Organism=Escherichia coli, GI226510982, Length=416, Percent_Identity=25.7211538461538, Blast_Score=153, Evalue=5e-38,
Organism=Escherichia coli, GI1786507, Length=250, Percent_Identity=33.2, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI1790496, Length=244, Percent_Identity=31.9672131147541, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI87081743, Length=242, Percent_Identity=31.404958677686, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI87081980, Length=241, Percent_Identity=32.7800829875519, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI1788502, Length=237, Percent_Identity=31.6455696202532, Blast_Score=125, Evalue=9e-30,
Organism=Escherichia coli, GI87081845, Length=247, Percent_Identity=31.1740890688259, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI1788381, Length=233, Percent_Identity=32.1888412017167, Blast_Score=112, Evalue=9e-26,
Organism=Escherichia coli, GI1788849, Length=247, Percent_Identity=32.7935222672065, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI1787055, Length=272, Percent_Identity=29.0441176470588, Blast_Score=109, Evalue=5e-25,
Organism=Escherichia coli, GI1788956, Length=156, Percent_Identity=33.974358974359, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI1786584, Length=173, Percent_Identity=31.7919075144509, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI87081977, Length=150, Percent_Identity=31.3333333333333, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI87082096, Length=248, Percent_Identity=26.2096774193548, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=31.7365269461078, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=30.9090909090909, Blast_Score=77, Evalue=6e-15,
Organism=Escherichia coli, GI87082007, Length=161, Percent_Identity=31.6770186335404, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787802, Length=163, Percent_Identity=31.9018404907975, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI87081881, Length=181, Percent_Identity=32.0441988950276, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081974, Length=153, Percent_Identity=32.6797385620915, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787056, Length=126, Percent_Identity=37.3015873015873, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 80873; Mature: 80741

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVRSLFQGRSSGSDASSAANDAGVIGPGDTRRRLQVLEDIEQSGIGWIWASDADGRLIY
CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEE
LTEGACQHLDRGPEELLGTPLVELFETDPDDPDGGTSRPLNFQLKAHNKLKDLTVRFALR
EECHHHHHHCCCHHHHHCCCHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
KSASDVKQTWWSLTAHPKFDGSGNFCGYRGNAKDITVEYERKLVDTKLAEYDSLTGLANR
HHHHHHHHHHHHEECCCCCCCCCCEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
HYMNKRLENILAAYKTAKRSCALMMLDLDKFKQVNDTMGHPAGDAVLVQASERLRAIIGD
HHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHCC
RGEIGRLGGDEFQVILPDIDDRGTLGEIAEKIIKIVSQPYPVEDDKRAIIGTSVGIAIAP
CCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEEC
YDGVEKEELVKGSDLALYAAKNGGRGQFRFYHADLKDEEQERQALLDDLRQALAAGELQL
CCCCCHHHHCCCCCEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEE
NYQPVVRADDNQVVCLEALMRWHHEERGSVSPDVFIPVAEESDLIIQMGEWALRQACEDA
CCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECHHHHHHHHHHH
LQWPKSVRVAVNVSAVQFASKSFPETVANVLAHTGIDADRLELELTESVFLGDTDATEET
HCCCCCEEEEEEEHHHHHHHHCCHHHHHHHHHHCCCCHHHEEEEEECEEEECCCCCCHHH
FKMLKSLGVRLALDDFGTGYSSLSYLRSAPFDKIKVDRSFVDSCTEQEKNSAKIIAAIVG
HHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCCEECCHHHHHHHHHHCCCCHHHHHHHHH
LSNALGMETTVEGVEAFDQLEIVRSKGAKLIQGWLYARAMAQETILQMMASGEFKIEPDG
HHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCC
PDMHRRERRSVFRRIGIIHGDHHYRAVMRDLSTTGARIEGLVGVPKGTALVLDLGAGQLV
CCHHHHHHHHHHHHHCCEECCHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCEE
VCEVTRSKEAMIGVEFETPLVSDGAGGLVTRHRVSPYALAAAGMPLTALPDGSYPMEQLH
EEEECCCCCEEEEEEECCCCCCCCCCCCEEECCCCCHHHHHCCCCEEECCCCCCCHHHHC
GVPKGKPQFLEVIVGNR
CCCCCCCCEEEEEECCC
>Mature Secondary Structure 
SVRSLFQGRSSGSDASSAANDAGVIGPGDTRRRLQVLEDIEQSGIGWIWASDADGRLIY
CHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEE
LTEGACQHLDRGPEELLGTPLVELFETDPDDPDGGTSRPLNFQLKAHNKLKDLTVRFALR
EECHHHHHHCCCHHHHHCCCHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
KSASDVKQTWWSLTAHPKFDGSGNFCGYRGNAKDITVEYERKLVDTKLAEYDSLTGLANR
HHHHHHHHHHHHEECCCCCCCCCCEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
HYMNKRLENILAAYKTAKRSCALMMLDLDKFKQVNDTMGHPAGDAVLVQASERLRAIIGD
HHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHCC
RGEIGRLGGDEFQVILPDIDDRGTLGEIAEKIIKIVSQPYPVEDDKRAIIGTSVGIAIAP
CCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEEC
YDGVEKEELVKGSDLALYAAKNGGRGQFRFYHADLKDEEQERQALLDDLRQALAAGELQL
CCCCCHHHHCCCCCEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEE
NYQPVVRADDNQVVCLEALMRWHHEERGSVSPDVFIPVAEESDLIIQMGEWALRQACEDA
CCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECHHHHHHHHHHH
LQWPKSVRVAVNVSAVQFASKSFPETVANVLAHTGIDADRLELELTESVFLGDTDATEET
HCCCCCEEEEEEEHHHHHHHHCCHHHHHHHHHHCCCCHHHEEEEEECEEEECCCCCCHHH
FKMLKSLGVRLALDDFGTGYSSLSYLRSAPFDKIKVDRSFVDSCTEQEKNSAKIIAAIVG
HHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCCEECCHHHHHHHHHHCCCCHHHHHHHHH
LSNALGMETTVEGVEAFDQLEIVRSKGAKLIQGWLYARAMAQETILQMMASGEFKIEPDG
HHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCC
PDMHRRERRSVFRRIGIIHGDHHYRAVMRDLSTTGARIEGLVGVPKGTALVLDLGAGQLV
CCHHHHHHHHHHHHHCCEECCHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCEE
VCEVTRSKEAMIGVEFETPLVSDGAGGLVTRHRVSPYALAAAGMPLTALPDGSYPMEQLH
EEEECCCCCEEEEEEECCCCCCCCCCCCEEECCCCCHHHHHCCCCEEECCCCCCCHHHHC
GVPKGKPQFLEVIVGNR
CCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]