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The map label for this gene is hspD [H]

Identifier: 85373656

GI number: 85373656

Start: 856423

End: 856923

Strand: Reverse

Name: hspD [H]

Synonym: ELI_04145

Alternate gene names: 85373656

Gene position: 856923-856423 (Counterclockwise)

Preceding gene: 85373657

Following gene: 85373655

Centisome position: 28.07

GC content: 59.48

Gene sequence:

>501_bases
TTGCTCAACAAGGAGGATTTGGAAATGAGAACTGCATTTGATTTGACCCCCTATCGTCGCTCGACGGTCGGATTCGACCG
GCTCTTCGATGCGCTCGAGAACAGCTTCCGCGCTGAGACGCAGGATAGCTACCCGCCCTTCGATATCGTCCGCACCGGCG
AGGACAGCTACCGGATCACTCTAGCGGTTGCCGGCTTCCGCCCGGACGAAATTGACGTCACTGCACAGCAGAACCAGCTC
GTCATCTCTGCTCAGAAGGAGGAGAAGGACGAAGACGATGTCGAATTCGTTCACCGCGGGATCGCTGCCCGCGCGTTCGA
GCGCCGGTTCCAGCTGGCCGACTATGTCGAAGTGCGCGATGCGGACTATGAGCACGGCATGCTGACGATATCGCTCCAGC
GAATCGTTCCGGAATCGCTCAAGCCGCGCAAGATCGCCATCGGCAGCCGCGAGCATGTCAATGACGACACGCCGCAGCTG
ACCGGAGACAAGGCGGCTTAA

Upstream 100 bases:

>100_bases
TTGCGAGTTTCCTAATTTCGTTAATACCGGATGCCATAGCGGGTCCGGTTGGACATTAGGGCGTCAGCTCTTTCGTTCGC
TGACGCTTCTCGTGCCCAGA

Downstream 100 bases:

>100_bases
GCCTCAATCATCGGGCGAATCCTCGGTGGGGTGGGTGCAATCGCACCTGCCCCGCTTGATGGAGTTTTGCCCAAACCAGT
CGGATATAAGGAGGGCTGTC

Product: putative small heat shock protein, hsp20 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MLNKEDLEMRTAFDLTPYRRSTVGFDRLFDALENSFRAETQDSYPPFDIVRTGEDSYRITLAVAGFRPDEIDVTAQQNQL
VISAQKEEKDEDDVEFVHRGIAARAFERRFQLADYVEVRDADYEHGMLTISLQRIVPESLKPRKIAIGSREHVNDDTPQL
TGDKAA

Sequences:

>Translated_166_residues
MLNKEDLEMRTAFDLTPYRRSTVGFDRLFDALENSFRAETQDSYPPFDIVRTGEDSYRITLAVAGFRPDEIDVTAQQNQL
VISAQKEEKDEDDVEFVHRGIAARAFERRFQLADYVEVRDADYEHGMLTISLQRIVPESLKPRKIAIGSREHVNDDTPQL
TGDKAA
>Mature_166_residues
MLNKEDLEMRTAFDLTPYRRSTVGFDRLFDALENSFRAETQDSYPPFDIVRTGEDSYRITLAVAGFRPDEIDVTAQQNQL
VISAQKEEKDEDDVEFVHRGIAARAFERRFQLADYVEVRDADYEHGMLTISLQRIVPESLKPRKIAIGSREHVNDDTPQL
TGDKAA

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

Organism=Escherichia coli, GI1790122, Length=140, Percent_Identity=46.4285714285714, Blast_Score=130, Evalue=5e-32,
Organism=Escherichia coli, GI87082316, Length=143, Percent_Identity=36.3636363636364, Blast_Score=103, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 19041; Mature: 19041

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNKEDLEMRTAFDLTPYRRSTVGFDRLFDALENSFRAETQDSYPPFDIVRTGEDSYRIT
CCCCHHCCHHHEECCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEE
LAVAGFRPDEIDVTAQQNQLVISAQKEEKDEDDVEFVHRGIAARAFERRFQLADYVEVRD
EEEECCCCCCEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ADYEHGMLTISLQRIVPESLKPRKIAIGSREHVNDDTPQLTGDKAA
CCCCCCEEEEEEHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLNKEDLEMRTAFDLTPYRRSTVGFDRLFDALENSFRAETQDSYPPFDIVRTGEDSYRIT
CCCCHHCCHHHEECCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEE
LAVAGFRPDEIDVTAQQNQLVISAQKEEKDEDDVEFVHRGIAARAFERRFQLADYVEVRD
EEEECCCCCCEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ADYEHGMLTISLQRIVPESLKPRKIAIGSREHVNDDTPQLTGDKAA
CCCCCCEEEEEEHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]