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The map label for this gene is ccmH [H]

Identifier: 85373603

GI number: 85373603

Start: 801092

End: 801493

Strand: Direct

Name: ccmH [H]

Synonym: ELI_03880

Alternate gene names: 85373603

Gene position: 801092-801493 (Clockwise)

Preceding gene: 85373602

Following gene: 85373604

Centisome position: 26.24

GC content: 66.67

Gene sequence:

>402_bases
ATGATCCGTCTCCTCGCTCTCGTTCTCGCACTTCTCGCCGCGCCGCTCGCCGCGCAGCAGCGATTGCCCGATGCACCGCT
GGCCAATGTCCAGCTTGAGGACCCGGCGCAGGAGCAGGCCGCGCTCGACCTGATGGAGACATTGCGCTGCCTCACCTGCC
AGTCGCAATCGATCCATGACAGCGACGCGCCCATCGCCGGTGACATGCGCCACCAGGTCCGCAGCCGCATTGCGGCGGGC
GAACATCCGGAGCAGATTCGCGCGTGGATGATCGAGCGCTACGGCGATTATATCAGCTACAGCCCGACCGTGAGCCGGAC
GACTTGGCCGCTCTACATGGTCCCGGTCCTGCTCATGCTCGCGGCGCTGGGCCTGTTCTGGCGCCGGATGCGCCGCTCGT
GA

Upstream 100 bases:

>100_bases
CCTTCGTGATCGATGGCGAGGGCGTGATCCGATACCAGCATATCGGCGATATCCGGCCCGAACACATCTCGGACCTGCTG
CGCGAGCTGGAGGCGGCGGG

Downstream 100 bases:

>100_bases
GCACCTGGATCGCGATTGCCGCTATGGCGCTTACGGCTTTCGGGCTGGGTGCGTGGCTGCTGCGCGAGCAGCGCGGTGTC
TGGACCTTGATGGCGGCGAT

Product: cytochrome c biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MIRLLALVLALLAAPLAAQQRLPDAPLANVQLEDPAQEQAALDLMETLRCLTCQSQSIHDSDAPIAGDMRHQVRSRIAAG
EHPEQIRAWMIERYGDYISYSPTVSRTTWPLYMVPVLLMLAALGLFWRRMRRS

Sequences:

>Translated_133_residues
MIRLLALVLALLAAPLAAQQRLPDAPLANVQLEDPAQEQAALDLMETLRCLTCQSQSIHDSDAPIAGDMRHQVRSRIAAG
EHPEQIRAWMIERYGDYISYSPTVSRTTWPLYMVPVLLMLAALGLFWRRMRRS
>Mature_133_residues
MIRLLALVLALLAAPLAAQQRLPDAPLANVQLEDPAQEQAALDLMETLRCLTCQSQSIHDSDAPIAGDMRHQVRSRIAAG
EHPEQIRAWMIERYGDYISYSPTVSRTTWPLYMVPVLLMLAALGLFWRRMRRS

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1790512, Length=78, Percent_Identity=44.8717948717949, Blast_Score=78, Evalue=2e-16,
Organism=Escherichia coli, GI1788522, Length=88, Percent_Identity=38.6363636363636, Blast_Score=74, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 15025; Mature: 15025

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLLALVLALLAAPLAAQQRLPDAPLANVQLEDPAQEQAALDLMETLRCLTCQSQSIHD
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
SDAPIAGDMRHQVRSRIAAGEHPEQIRAWMIERYGDYISYSPTVSRTTWPLYMVPVLLML
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
AALGLFWRRMRRS
HHHHHHHHHHHCC
>Mature Secondary Structure
MIRLLALVLALLAAPLAAQQRLPDAPLANVQLEDPAQEQAALDLMETLRCLTCQSQSIHD
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
SDAPIAGDMRHQVRSRIAAGEHPEQIRAWMIERYGDYISYSPTVSRTTWPLYMVPVLLML
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
AALGLFWRRMRRS
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]