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The map label for this gene is ccmF [H]

Identifier: 85373601

GI number: 85373601

Start: 798607

End: 800556

Strand: Direct

Name: ccmF [H]

Synonym: ELI_03870

Alternate gene names: 85373601

Gene position: 798607-800556 (Clockwise)

Preceding gene: 85373600

Following gene: 85373602

Centisome position: 26.16

GC content: 65.18

Gene sequence:

>1950_bases
ATGATCGCGGAGGTCGGCCTCGCCGCGCTGTGGATGGCCGCAGCGCTTGCACTCGGGCAGATGGTTTGCGGCGCGCTGGC
CTTGCGAGAGCAGGGCGCGGAGATCGGTGCGCTGACCCGGCCATTCGCCATCGTACAGGGCCTGCTGCTCGCTATCTCCT
TCGCCTGCCTGCTCTATCTCTTTGCAATCACCGATCTTTCGACGAAGCTCGTCGTCGCCAATTCGCATGTCGACAAGCCG
ATGATCTTCAAGGTCACCGGTGTCTGGGGCAACCATGAAGGTTCGATGCTGCTGTGGGTCACGGTAATGGCGCTGGCCGG
TGCGCTGATCGCATGGCTCGAGCGGCGACTGCCTGAGAACACCATGCAGGCGACACTGGCCGCGCAAGGCTTCGTCGCGC
TGGGGTTCTTCGCTTTCCTGCTGTTCAGTTCCAATCCGTTCGAGCGGCTGCCGACCCCCGCAGTTTCCGGCGTTGGCCTC
AATCCGTTGCTGCAGGACATCGGCTTGGCCTTCCATCCGCCGACGCTTTACATCGGCTATGTCGGCCTGTCGGTCGCCTT
CAGCTTCGTCGTCGGCGCGCTGGTCACGCGGCAGGTGACGCCCGACTTTGCCCGCGCGATGCGGCCCTGGGTGCTGGGCG
CGTGGGTGTTCCTGACGCTCGGCATCACCGCGGGCAGTTACTGGGCCTATTACGAGCTCGGCTGGGGTGGCTACTGGTTC
TGGGACCCGGTCGAGAACGCGTCGCTTATGCCGTGGCTCGCGGCGACGGCGCTGCTGCATTCGGTCGGCGTGCTGGCCGC
GCGCGATGCATTACGGACATGGACCGTCATGCTCGGCGTGATCGCCTTCTCCATGAGCATGCTCGGCACGTTCCTCGTAC
GTTCGGGAGTGTTGACCAGTGTCCACGCCTTCGCCGTCGACCCCGAGCGCGGCGCTTTCATCCTTGCATTGCTGGTCCTC
TATATCGGCGGCTCGCTGGCGCTCTTCGCCCTTCGCGCGGGCAGCATTTCGGAGGGAGAGCGCTTCACATTGGCGAGCCG
CGAGAGCGCGCTGGTATTCAACAATGTGATGCTCAGCGCCATCCTCGGCGTAGTGCTGCTCGGCACGCTCTATCCGCTGC
TGGCTGAGGCCTTCAATGCGCGCGTGTCGGTCGGGCCGCCTTACTTCAATCCGGTCAGTGCGGTCTTCGCCGTGCCGATG
TTCCTGGTGCTGGCGGTCGGTCCGCTGCTGCAATGGCGCAAGGACAGGTTCAGCCGGATCAAGACGCCGGTGATGATTTC
CGGCGCTGCATTGGTGTTGGCGCTGGTCGGCCTCGGCCTGTTTGTCGACATGAGCATACTGGCGCTGATCGGCTTTGCGC
TGGCGATCGGCCTCGGTGTCGCGAGCCTGCAACCTCTGTGGGGCCGCAACCTGTTGCGCGTGCCGACCGCGACTTGGGGC
ATGGTCGCAGCGCATTTCGGAGTCGCGGTGGCGCTGTTCGGCATTGCCAGCGAAGCGGCGCTGACCGAAGAGCGGCTGGC
TGCGCTGACCCCGGGTGAAAGCGTTGTAGTGGGCGAATGGATGGTGACGCTCGACGGCGTGGAGCCGCGCGCCGGGCCGA
ACTGGACCGCGCTCGAAGCCCGCATCCTGGCGAGCTACGACGGCGGTGCGCAGCGCGCGCTGGCACCGCAGGCGCGTACG
TTCACCGAACCCGTGCAGGAAACCACGGAAAGCGCGCTCGAAACGCGCTGGAACGGCCAACTTTACGCCACGCTCGGCAA
CCGCCTGCCCGACGGTCGCTGGCAATTGCGGTTGTGGTGGAAACCCTTCGTTACGTTGATCTGGTTCGGCGGTATATTGA
TCGCGCTGGGCGGTGCGCTTGCCATTGTCGGGCACCTGCGCGTTCACTTGCGCCGCCAATCGATCGAACGGCAGATCGCG
CTTCGCCACGGGCAGGAGCTACCGGCATGA

Upstream 100 bases:

>100_bases
ATCTACTCGCCAAGCATGACGAGAACTACGTGCCGCGCGAATTGCAGGACATGGAGCAGCATCAGGCGGCCGACGTTTAC
GGCGAGACGGTCGAAGGTAC

Downstream 100 bases:

>100_bases
ACAAGCTGCTGATCTGGGGGCCGCTGGCGCTGTTCCTGTTCTTTGCCGGGGTGGCGGGATACCAGTTGACCCAGCCGAAG
GACGAGACCGTGCGCAGCGC

Product: cytochrome c biogenesis factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 649; Mature: 649

Protein sequence:

>649_residues
MIAEVGLAALWMAAALALGQMVCGALALREQGAEIGALTRPFAIVQGLLLAISFACLLYLFAITDLSTKLVVANSHVDKP
MIFKVTGVWGNHEGSMLLWVTVMALAGALIAWLERRLPENTMQATLAAQGFVALGFFAFLLFSSNPFERLPTPAVSGVGL
NPLLQDIGLAFHPPTLYIGYVGLSVAFSFVVGALVTRQVTPDFARAMRPWVLGAWVFLTLGITAGSYWAYYELGWGGYWF
WDPVENASLMPWLAATALLHSVGVLAARDALRTWTVMLGVIAFSMSMLGTFLVRSGVLTSVHAFAVDPERGAFILALLVL
YIGGSLALFALRAGSISEGERFTLASRESALVFNNVMLSAILGVVLLGTLYPLLAEAFNARVSVGPPYFNPVSAVFAVPM
FLVLAVGPLLQWRKDRFSRIKTPVMISGAALVLALVGLGLFVDMSILALIGFALAIGLGVASLQPLWGRNLLRVPTATWG
MVAAHFGVAVALFGIASEAALTEERLAALTPGESVVVGEWMVTLDGVEPRAGPNWTALEARILASYDGGAQRALAPQART
FTEPVQETTESALETRWNGQLYATLGNRLPDGRWQLRLWWKPFVTLIWFGGILIALGGALAIVGHLRVHLRRQSIERQIA
LRHGQELPA

Sequences:

>Translated_649_residues
MIAEVGLAALWMAAALALGQMVCGALALREQGAEIGALTRPFAIVQGLLLAISFACLLYLFAITDLSTKLVVANSHVDKP
MIFKVTGVWGNHEGSMLLWVTVMALAGALIAWLERRLPENTMQATLAAQGFVALGFFAFLLFSSNPFERLPTPAVSGVGL
NPLLQDIGLAFHPPTLYIGYVGLSVAFSFVVGALVTRQVTPDFARAMRPWVLGAWVFLTLGITAGSYWAYYELGWGGYWF
WDPVENASLMPWLAATALLHSVGVLAARDALRTWTVMLGVIAFSMSMLGTFLVRSGVLTSVHAFAVDPERGAFILALLVL
YIGGSLALFALRAGSISEGERFTLASRESALVFNNVMLSAILGVVLLGTLYPLLAEAFNARVSVGPPYFNPVSAVFAVPM
FLVLAVGPLLQWRKDRFSRIKTPVMISGAALVLALVGLGLFVDMSILALIGFALAIGLGVASLQPLWGRNLLRVPTATWG
MVAAHFGVAVALFGIASEAALTEERLAALTPGESVVVGEWMVTLDGVEPRAGPNWTALEARILASYDGGAQRALAPQART
FTEPVQETTESALETRWNGQLYATLGNRLPDGRWQLRLWWKPFVTLIWFGGILIALGGALAIVGHLRVHLRRQSIERQIA
LRHGQELPA
>Mature_649_residues
MIAEVGLAALWMAAALALGQMVCGALALREQGAEIGALTRPFAIVQGLLLAISFACLLYLFAITDLSTKLVVANSHVDKP
MIFKVTGVWGNHEGSMLLWVTVMALAGALIAWLERRLPENTMQATLAAQGFVALGFFAFLLFSSNPFERLPTPAVSGVGL
NPLLQDIGLAFHPPTLYIGYVGLSVAFSFVVGALVTRQVTPDFARAMRPWVLGAWVFLTLGITAGSYWAYYELGWGGYWF
WDPVENASLMPWLAATALLHSVGVLAARDALRTWTVMLGVIAFSMSMLGTFLVRSGVLTSVHAFAVDPERGAFILALLVL
YIGGSLALFALRAGSISEGERFTLASRESALVFNNVMLSAILGVVLLGTLYPLLAEAFNARVSVGPPYFNPVSAVFAVPM
FLVLAVGPLLQWRKDRFSRIKTPVMISGAALVLALVGLGLFVDMSILALIGFALAIGLGVASLQPLWGRNLLRVPTATWG
MVAAHFGVAVALFGIASEAALTEERLAALTPGESVVVGEWMVTLDGVEPRAGPNWTALEARILASYDGGAQRALAPQART
FTEPVQETTESALETRWNGQLYATLGNRLPDGRWQLRLWWKPFVTLIWFGGILIALGGALAIVGHLRVHLRRQSIERQIA
LRHGQELPA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=630, Percent_Identity=43.1746031746032, Blast_Score=462, Evalue=1e-131,
Organism=Escherichia coli, GI1790511, Length=383, Percent_Identity=40.4699738903394, Blast_Score=248, Evalue=6e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 69820; Mature: 69820

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAEVGLAALWMAAALALGQMVCGALALREQGAEIGALTRPFAIVQGLLLAISFACLLYL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
FAITDLSTKLVVANSHVDKPMIFKVTGVWGNHEGSMLLWVTVMALAGALIAWLERRLPEN
HHHHCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH
TMQATLAAQGFVALGFFAFLLFSSNPFERLPTPAVSGVGLNPLLQDIGLAFHPPTLYIGY
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHH
VGLSVAFSFVVGALVTRQVTPDFARAMRPWVLGAWVFLTLGITAGSYWAYYELGWGGYWF
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEE
WDPVENASLMPWLAATALLHSVGVLAARDALRTWTVMLGVIAFSMSMLGTFLVRSGVLTS
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAFAVDPERGAFILALLVLYIGGSLALFALRAGSISEGERFTLASRESALVFNNVMLSA
HHHEEECCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHH
ILGVVLLGTLYPLLAEAFNARVSVGPPYFNPVSAVFAVPMFLVLAVGPLLQWRKDRFSRI
HHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KTPVMISGAALVLALVGLGLFVDMSILALIGFALAIGLGVASLQPLWGRNLLRVPTATWG
CCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEECCCCHHH
MVAAHFGVAVALFGIASEAALTEERLAALTPGESVVVGEWMVTLDGVEPRAGPNWTALEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCCCHHHHH
RILASYDGGAQRALAPQARTFTEPVQETTESALETRWNGQLYATLGNRLPDGRWQLRLWW
EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEHH
KPFVTLIWFGGILIALGGALAIVGHLRVHLRRQSIERQIALRHGQELPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIAEVGLAALWMAAALALGQMVCGALALREQGAEIGALTRPFAIVQGLLLAISFACLLYL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
FAITDLSTKLVVANSHVDKPMIFKVTGVWGNHEGSMLLWVTVMALAGALIAWLERRLPEN
HHHHCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH
TMQATLAAQGFVALGFFAFLLFSSNPFERLPTPAVSGVGLNPLLQDIGLAFHPPTLYIGY
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHH
VGLSVAFSFVVGALVTRQVTPDFARAMRPWVLGAWVFLTLGITAGSYWAYYELGWGGYWF
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEE
WDPVENASLMPWLAATALLHSVGVLAARDALRTWTVMLGVIAFSMSMLGTFLVRSGVLTS
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAFAVDPERGAFILALLVLYIGGSLALFALRAGSISEGERFTLASRESALVFNNVMLSA
HHHEEECCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHH
ILGVVLLGTLYPLLAEAFNARVSVGPPYFNPVSAVFAVPMFLVLAVGPLLQWRKDRFSRI
HHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KTPVMISGAALVLALVGLGLFVDMSILALIGFALAIGLGVASLQPLWGRNLLRVPTATWG
CCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEECCCCHHH
MVAAHFGVAVALFGIASEAALTEERLAALTPGESVVVGEWMVTLDGVEPRAGPNWTALEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCCCHHHHH
RILASYDGGAQRALAPQARTFTEPVQETTESALETRWNGQLYATLGNRLPDGRWQLRLWW
EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEHH
KPFVTLIWFGGILIALGGALAIVGHLRVHLRRQSIERQIALRHGQELPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]