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The map label for this gene is psd

Identifier: 85373577

GI number: 85373577

Start: 778060

End: 778809

Strand: Direct

Name: psd

Synonym: ELI_03750

Alternate gene names: 85373577

Gene position: 778060-778809 (Clockwise)

Preceding gene: 85373576

Following gene: 85373578

Centisome position: 25.49

GC content: 63.87

Gene sequence:

>750_bases
ATGGCAAATGATTTGCTCGACAATAAGGGTCGCGGCGAGGCCGGCTGGAGCTGGCCCGCCATCCATCCCGAGGGGCGCAA
ATACGGGCTGGTGGTGGCAGCCGCTTCGCTTGTCACCGCCTTCCTTGCATGGGAGACGATCGCCTGGCCGCTGGCCTTCC
TCGCGCTGGGCGTGCTCGCTTTCTTTCGCGATCCCGAGCGCATCGTCCCGCATGACGAAAAAGCCATCGTGTCGCCTGCC
GACGGCATGGTGTCTCTGATCAGCGAAGTGGAACCTCCGCCCGAACTGGCGATGGCCGATGCTGCCGGCAATCCGGGCCT
CGGCGATGCGCCGTTGACCCGCATCTCGATTTTCATGAGCGTGTTCGATGTCCACATCAACCGCACCCCCATCGCCGGGC
AGGTCAGCCGCCTGATTTACGTTCCGGGCAAGTTCCTCAACGCCGATCTCGACAAGGCCAGCGAAGAGAACGAGCGGCAG
CACCTGCTGGTTTCGCGCCCCGACGGTTTGCAGATCGGCTTCACTCAGATTGCCGGTCTCGTCGCGCGCCGGATCGTGCC
CTTCGTCAAGCAGGGCGACATTGTGGCCGTGGGCCAGCGCATCGGCCTGATTCGCTTCGGCAGTCGCGTCGATGTCTATC
TGCCGGCCGGCACGGCGCCGGCGGTCATCAAGGGACAGAAGGTCGTCGCCGGGGAAACGGTGCTGGCGCGTGTCGGTGAG
AACAGGCTTTTGGAAGGTAGTGCACAATGA

Upstream 100 bases:

>100_bases
ATTCCGCCGGGACGGTTTTCGTTCGCAAGGCGGCCTGATGCCCTGCGCCGACAAGTTGTTTTCCTTGTCGCCCCCGTTTC
CAGCACCTAGGTGAGGCCCC

Downstream 100 bases:

>100_bases
GCGGCGAACGCGAACGGCTCGGGCCCCAGGCCGCCGAAGACGATCCGCCCGTGCTCGGCACCGCGAAGGGGCTGACCCTG
CGGGCGGTCGTACCCAACGC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MANDLLDNKGRGEAGWSWPAIHPEGRKYGLVVAAASLVTAFLAWETIAWPLAFLALGVLAFFRDPERIVPHDEKAIVSPA
DGMVSLISEVEPPPELAMADAAGNPGLGDAPLTRISIFMSVFDVHINRTPIAGQVSRLIYVPGKFLNADLDKASEENERQ
HLLVSRPDGLQIGFTQIAGLVARRIVPFVKQGDIVAVGQRIGLIRFGSRVDVYLPAGTAPAVIKGQKVVAGETVLARVGE
NRLLEGSAQ

Sequences:

>Translated_249_residues
MANDLLDNKGRGEAGWSWPAIHPEGRKYGLVVAAASLVTAFLAWETIAWPLAFLALGVLAFFRDPERIVPHDEKAIVSPA
DGMVSLISEVEPPPELAMADAAGNPGLGDAPLTRISIFMSVFDVHINRTPIAGQVSRLIYVPGKFLNADLDKASEENERQ
HLLVSRPDGLQIGFTQIAGLVARRIVPFVKQGDIVAVGQRIGLIRFGSRVDVYLPAGTAPAVIKGQKVVAGETVLARVGE
NRLLEGSAQ
>Mature_248_residues
ANDLLDNKGRGEAGWSWPAIHPEGRKYGLVVAAASLVTAFLAWETIAWPLAFLALGVLAFFRDPERIVPHDEKAIVSPAD
GMVSLISEVEPPPELAMADAAGNPGLGDAPLTRISIFMSVFDVHINRTPIAGQVSRLIYVPGKFLNADLDKASEENERQH
LLVSRPDGLQIGFTQIAGLVARRIVPFVKQGDIVAVGQRIGLIRFGSRVDVYLPAGTAPAVIKGQKVVAGETVLARVGEN
RLLEGSAQ

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_ERYLH (Q2NBU9)

Other databases:

- EMBL:   CP000157
- RefSeq:   YP_457639.1
- STRING:   Q2NBU9
- GeneID:   3871391
- GenomeReviews:   CP000157_GR
- KEGG:   eli:ELI_03750
- NMPDR:   fig|314225.3.peg.2329
- eggNOG:   COG0688
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- BioCyc:   ELIT314225:ELI_03750-MONOMER
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 26657; Mature: 26526

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANDLLDNKGRGEAGWSWPAIHPEGRKYGLVVAAASLVTAFLAWETIAWPLAFLALGVLA
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFRDPERIVPHDEKAIVSPADGMVSLISEVEPPPELAMADAAGNPGLGDAPLTRISIFMS
HHCCCHHCCCCCCCEEECCCHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHHHHH
VFDVHINRTPIAGQVSRLIYVPGKFLNADLDKASEENERQHLLVSRPDGLQIGFTQIAGL
HHHHHCCCCCCHHHCEEEEECCCHHHCCCHHHCCCCCCCCEEEEECCCCCEECHHHHHHH
VARRIVPFVKQGDIVAVGQRIGLIRFGSRVDVYLPAGTAPAVIKGQKVVAGETVLARVGE
HHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEECCCCCCCEEECCEEECCHHHHHHHCC
NRLLEGSAQ
CCCCCCCCC
>Mature Secondary Structure 
ANDLLDNKGRGEAGWSWPAIHPEGRKYGLVVAAASLVTAFLAWETIAWPLAFLALGVLA
CCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFRDPERIVPHDEKAIVSPADGMVSLISEVEPPPELAMADAAGNPGLGDAPLTRISIFMS
HHCCCHHCCCCCCCEEECCCHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHHHHH
VFDVHINRTPIAGQVSRLIYVPGKFLNADLDKASEENERQHLLVSRPDGLQIGFTQIAGL
HHHHHCCCCCCHHHCEEEEECCCHHHCCCHHHCCCCCCCCEEEEECCCCCEECHHHHHHH
VARRIVPFVKQGDIVAVGQRIGLIRFGSRVDVYLPAGTAPAVIKGQKVVAGETVLARVGE
HHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEECCCCCCCEEECCEEECCHHHHHHHCC
NRLLEGSAQ
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA