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The map label for this gene is rbfA [H]

Identifier: 85373520

GI number: 85373520

Start: 715871

End: 716209

Strand: Direct

Name: rbfA [H]

Synonym: ELI_03465

Alternate gene names: 85373520

Gene position: 715871-716209 (Clockwise)

Preceding gene: 85373519

Following gene: 85373521

Centisome position: 23.45

GC content: 62.83

Gene sequence:

>339_bases
GTGCGGCATATTCTCAGCGAATTGCTTGCGCGGCAGGAGGTCCATGACGAAACGGTCAGCGCGGCCAACATCGCCGTCAC
CGAGGTTCGCATGACGCCCGACCTGCGCAACGCGACCGCCTATGTGAAGCCGCTGCTGGGCAAGGAGGAGGACGAGATCG
TCTCCGCGTTGCGGCAGAATACGGCCTACCTGCAGAAGGAAGTCGCCAAGCGGCTCGGCCTCAAATTCGCGCCCAAGCTC
ATGTTCCGGCCCGACGAAAGCTTCGACGAGGCCGACCGGATCGAGAAATTGTTGCGAGACCCGAAGGTCGCGCGCGATCT
GGGCGACGAGGAAGAGTAG

Upstream 100 bases:

>100_bases
CATCGCTCAAACGTATTCTCGGCAAAATGGTGGCCTGATGGCGCGACAGCAATTTACCCCTGAACAACACTCGGTTCGTG
TCCTTAAAGTGGCTGAGCGC

Downstream 100 bases:

>100_bases
CGCGCCGCACTCGCTTTGTTGCTAGGCTCTTCGCAAGGAAGAGGAGAGCCATGACCGATCAACGCGTCCGAACCGATAAT
CCCGCAAATGGCGTCGCCCG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 112

Protein sequence:

>112_residues
MRHILSELLARQEVHDETVSAANIAVTEVRMTPDLRNATAYVKPLLGKEEDEIVSALRQNTAYLQKEVAKRLGLKFAPKL
MFRPDESFDEADRIEKLLRDPKVARDLGDEEE

Sequences:

>Translated_112_residues
MRHILSELLARQEVHDETVSAANIAVTEVRMTPDLRNATAYVKPLLGKEEDEIVSALRQNTAYLQKEVAKRLGLKFAPKL
MFRPDESFDEADRIEKLLRDPKVARDLGDEEE
>Mature_112_residues
MRHILSELLARQEVHDETVSAANIAVTEVRMTPDLRNATAYVKPLLGKEEDEIVSALRQNTAYLQKEVAKRLGLKFAPKL
MFRPDESFDEADRIEKLLRDPKVARDLGDEEE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 12805; Mature: 12805

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHILSELLARQEVHDETVSAANIAVTEVRMTPDLRNATAYVKPLLGKEEDEIVSALRQN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
TAYLQKEVAKRLGLKFAPKLMFRPDESFDEADRIEKLLRDPKVARDLGDEEE
HHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHCCHHHHHCCCCCC
>Mature Secondary Structure
MRHILSELLARQEVHDETVSAANIAVTEVRMTPDLRNATAYVKPLLGKEEDEIVSALRQN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
TAYLQKEVAKRLGLKFAPKLMFRPDESFDEADRIEKLLRDPKVARDLGDEEE
HHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA