Click here to switch to the map view.

The map label for this gene is hofQ [C]

Identifier: 85373131

GI number: 85373131

Start: 348397

End: 350121

Strand: Reverse

Name: hofQ [C]

Synonym: ELI_01520

Alternate gene names: 85373131

Gene position: 350121-348397 (Counterclockwise)

Preceding gene: 85373132

Following gene: 85373130

Centisome position: 11.47

GC content: 62.43

Gene sequence:

>1725_bases
GTGAGCACCATCATGACCAACCCAATCTTATTCCGTCGCCAATTCGAAACGGCGAATTCCCAAACGAGGGGCAAGACCAT
GAAACGTCGCCTGATTGCAAAAGCGCTCGTCGCGAGCCTTGCCGCGCTGCCAGTCGCAGCCGGCCCGGCCCAGGTCGCGC
ACGCCCAGTCGATCGTGAAACCGTCGCAGGATGTCGTCCTGTCGATCGGTCGCGGTGAACTGATCAGCGTGCCCGGCGCG
ATGGCAGATGTGTTTATCGCCAACGACGCGGTGGCCGACGTCCAGATCAAATCGCAGCGCCAGCTCTATGTCTTCGGCAA
GTCCGGCGGCGAAACGACCATCTACGCCAGCAATTCCGCCGGCGACGTTATCTGGGCGGCCAATGTCCGCGTAGCGAACA
ATATCGACAGCCTCGACCAGATGCTGGCGCTCGCCATGCCTGAAGCGAAGATCGCCACGGCGACCATGGGCACCAACACT
GTGCTGCTGACCGGCACTGTCGCTGCTCCGGAAGATGCTGCCGAGGCAGAGCGTCTCGTGACGGCTTTCCTGGGTGACGG
TGCCAACGTTATCAGCCGCCTGAAAATGGCCACTCCGCTGCAGGTCAACCTGCAGGTGCGAATTGCCGAAGTCAGCCGCT
CGCTGGTACGTGAAATCGGCTCCAACCTGACGACCCGCGATACGACCGACGGCTTCCTGTTCGGTGTCAATCGCGGTCGC
AACTTCGGGTCGATTACCGACATCGACACATCAGGGTTTCCGCAACTCGACGCATCCGCACAGTTCGGCCTGCCGCCCGG
GTCGCTGAGCTTGCCATTCAACCCGGCAACCGGACAATTTGTCGTCGGTGGCGCGAATTTTCCCGTTGCGAGCAACAACC
CGGGTCAGACCGCGCTCAACTTCGCAGGCCGCCTGTTCGGTCTGGACATTGCCAGCGCATTCGATGTCGGCGAGCGCCTT
GGCCTGATCACGACGCTCTCCAATCCGAATCTGACCGCGCTCTCGGGCGAAACCGCCACCTTCCTGGCTGGCGGTGAATT
CCCGATCCCTATCAGCCAGGGCCTCGGTACGACTTCGATCGAATACCGCAACTTCGGCGTCAGCCTGGCCTATTCGCCGA
CCGTGCTCGCCAATGGCCGGATCTCGATCCGCGTGCGGCCGGAAGTGTCGGAACTCTCGAGCCAGGGCGCCATCACGCTC
AACGGCTTCCAGATCCCGGCCCTTACAACTCGGCGCGCTGAAACGACCGTGGAACTTGGCTCCGGCCAGAGCTTCATGAT
CGCAGGCCTGATGAGCAACAGCTCGCAGAATACCGTCGACAAGGCCCCAGGCCTCGGTGACGTGCCGATCATCGGCAACC
TGTTCCGTTCGACCTCGTTCCGCAAGGGCGAGACCGAACTGGTGATCGTGGTTACGCCGTATCTGGTGAAGCCGGTCGAC
GGCACCGACATCAAGCTGCCGACCGACGGCTATCAGACACCCAATGAGCTGCAGCGTACGCTGGGCTTCCTGGAGAATGA
CGGCAAGACCGGCGGCGATCGGCCCAAACCGACCGCCCAGGATCGCGACGGTCCCAACCCGGCCGTTTCGAGGATCGACC
CCGCAGCGGTGCTGCCTGCGCCGAAAACGCAGAAGGACGATCGCCGCAGCGCCAAGAAATCGAAGAAATCGAAGCGTGAC
AAGCAGCGCACCGCTGCTGCCGCGCCCGGTTTCAGCCTGAAGTGA

Upstream 100 bases:

>100_bases
AAGTGCCGATCGGCGCTGCCGGCAAGGTGCTGTCGGGCCAGCAACAAGGTCTCGGCGAAGCCGCCCAGGCGGTTCCCGCT
GCCAGTGCAGGAATGGTCCG

Downstream 100 bases:

>100_bases
GGAAGGTGAGAACGATGCCCAAACTGACTAGGAAACTTGCCGGGGTACTCACCCTGACTGTCGGCCTCTCGCTTGCCGCC
TGCGGTGGCATGCCGCAGAA

Product: type II secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 574; Mature: 573

Protein sequence:

>574_residues
MSTIMTNPILFRRQFETANSQTRGKTMKRRLIAKALVASLAALPVAAGPAQVAHAQSIVKPSQDVVLSIGRGELISVPGA
MADVFIANDAVADVQIKSQRQLYVFGKSGGETTIYASNSAGDVIWAANVRVANNIDSLDQMLALAMPEAKIATATMGTNT
VLLTGTVAAPEDAAEAERLVTAFLGDGANVISRLKMATPLQVNLQVRIAEVSRSLVREIGSNLTTRDTTDGFLFGVNRGR
NFGSITDIDTSGFPQLDASAQFGLPPGSLSLPFNPATGQFVVGGANFPVASNNPGQTALNFAGRLFGLDIASAFDVGERL
GLITTLSNPNLTALSGETATFLAGGEFPIPISQGLGTTSIEYRNFGVSLAYSPTVLANGRISIRVRPEVSELSSQGAITL
NGFQIPALTTRRAETTVELGSGQSFMIAGLMSNSSQNTVDKAPGLGDVPIIGNLFRSTSFRKGETELVIVVTPYLVKPVD
GTDIKLPTDGYQTPNELQRTLGFLENDGKTGGDRPKPTAQDRDGPNPAVSRIDPAAVLPAPKTQKDDRRSAKKSKKSKRD
KQRTAAAAPGFSLK

Sequences:

>Translated_574_residues
MSTIMTNPILFRRQFETANSQTRGKTMKRRLIAKALVASLAALPVAAGPAQVAHAQSIVKPSQDVVLSIGRGELISVPGA
MADVFIANDAVADVQIKSQRQLYVFGKSGGETTIYASNSAGDVIWAANVRVANNIDSLDQMLALAMPEAKIATATMGTNT
VLLTGTVAAPEDAAEAERLVTAFLGDGANVISRLKMATPLQVNLQVRIAEVSRSLVREIGSNLTTRDTTDGFLFGVNRGR
NFGSITDIDTSGFPQLDASAQFGLPPGSLSLPFNPATGQFVVGGANFPVASNNPGQTALNFAGRLFGLDIASAFDVGERL
GLITTLSNPNLTALSGETATFLAGGEFPIPISQGLGTTSIEYRNFGVSLAYSPTVLANGRISIRVRPEVSELSSQGAITL
NGFQIPALTTRRAETTVELGSGQSFMIAGLMSNSSQNTVDKAPGLGDVPIIGNLFRSTSFRKGETELVIVVTPYLVKPVD
GTDIKLPTDGYQTPNELQRTLGFLENDGKTGGDRPKPTAQDRDGPNPAVSRIDPAAVLPAPKTQKDDRRSAKKSKKSKRD
KQRTAAAAPGFSLK
>Mature_573_residues
STIMTNPILFRRQFETANSQTRGKTMKRRLIAKALVASLAALPVAAGPAQVAHAQSIVKPSQDVVLSIGRGELISVPGAM
ADVFIANDAVADVQIKSQRQLYVFGKSGGETTIYASNSAGDVIWAANVRVANNIDSLDQMLALAMPEAKIATATMGTNTV
LLTGTVAAPEDAAEAERLVTAFLGDGANVISRLKMATPLQVNLQVRIAEVSRSLVREIGSNLTTRDTTDGFLFGVNRGRN
FGSITDIDTSGFPQLDASAQFGLPPGSLSLPFNPATGQFVVGGANFPVASNNPGQTALNFAGRLFGLDIASAFDVGERLG
LITTLSNPNLTALSGETATFLAGGEFPIPISQGLGTTSIEYRNFGVSLAYSPTVLANGRISIRVRPEVSELSSQGAITLN
GFQIPALTTRRAETTVELGSGQSFMIAGLMSNSSQNTVDKAPGLGDVPIIGNLFRSTSFRKGETELVIVVTPYLVKPVDG
TDIKLPTDGYQTPNELQRTLGFLENDGKTGGDRPKPTAQDRDGPNPAVSRIDPAAVLPAPKTQKDDRRSAKKSKKSKRDK
QRTAAAAPGFSLK

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=203, Percent_Identity=30.0492610837438, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI87082242, Length=162, Percent_Identity=28.3950617283951, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 60445; Mature: 60314

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTIMTNPILFRRQFETANSQTRGKTMKRRLIAKALVASLAALPVAAGPAQVAHAQSIVK
CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC
PSQDVVLSIGRGELISVPGAMADVFIANDAVADVQIKSQRQLYVFGKSGGETTIYASNSA
CCCCEEEEECCCCEEECCCCCEEEEEECCCEEEEEEECCCEEEEEECCCCCEEEEECCCC
GDVIWAANVRVANNIDSLDQMLALAMPEAKIATATMGTNTVLLTGTVAAPEDAAEAERLV
CCEEEEECEEEECCHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHH
TAFLGDGANVISRLKMATPLQVNLQVRIAEVSRSLVREIGSNLTTRDTTDGFLFGVNRGR
HHHHCCCHHHHHHHHHCCCEEEEEEEEEHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCC
NFGSITDIDTSGFPQLDASAQFGLPPGSLSLPFNPATGQFVVGGANFPVASNNPGQTALN
CCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEECCCCCCCCCCCCCCHHHH
FAGRLFGLDIASAFDVGERLGLITTLSNPNLTALSGETATFLAGGEFPIPISQGLGTTSI
HHHHHEECHHHHHHHHHHHCEEEEEECCCCEEEECCCCEEEEECCCCCCCHHCCCCCCEE
EYRNFGVSLAYSPTVLANGRISIRVRPEVSELSSQGAITLNGFQIPALTTRRAETTVELG
EEECCCEEEEECCEEEECCEEEEEECCCHHHHCCCCCEEECCEECCCEECCCCCEEEEEC
SGQSFMIAGLMSNSSQNTVDKAPGLGDVPIIGNLFRSTSFRKGETELVIVVTPYLVKPVD
CCCEEEEEEEECCCCCCCHHCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEECCEEEECCC
GTDIKLPTDGYQTPNELQRTLGFLENDGKTGGDRPKPTAQDRDGPNPAVSRIDPAAVLPA
CCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHCCCC
PKTQKDDRRSAKKSKKSKRDKQRTAAAAPGFSLK
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
STIMTNPILFRRQFETANSQTRGKTMKRRLIAKALVASLAALPVAAGPAQVAHAQSIVK
CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC
PSQDVVLSIGRGELISVPGAMADVFIANDAVADVQIKSQRQLYVFGKSGGETTIYASNSA
CCCCEEEEECCCCEEECCCCCEEEEEECCCEEEEEEECCCEEEEEECCCCCEEEEECCCC
GDVIWAANVRVANNIDSLDQMLALAMPEAKIATATMGTNTVLLTGTVAAPEDAAEAERLV
CCEEEEECEEEECCHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHH
TAFLGDGANVISRLKMATPLQVNLQVRIAEVSRSLVREIGSNLTTRDTTDGFLFGVNRGR
HHHHCCCHHHHHHHHHCCCEEEEEEEEEHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCC
NFGSITDIDTSGFPQLDASAQFGLPPGSLSLPFNPATGQFVVGGANFPVASNNPGQTALN
CCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEECCCCCCCCCCCCCCHHHH
FAGRLFGLDIASAFDVGERLGLITTLSNPNLTALSGETATFLAGGEFPIPISQGLGTTSI
HHHHHEECHHHHHHHHHHHCEEEEEECCCCEEEECCCCEEEEECCCCCCCHHCCCCCCEE
EYRNFGVSLAYSPTVLANGRISIRVRPEVSELSSQGAITLNGFQIPALTTRRAETTVELG
EEECCCEEEEECCEEEECCEEEEEECCCHHHHCCCCCEEECCEECCCEECCCCCEEEEEC
SGQSFMIAGLMSNSSQNTVDKAPGLGDVPIIGNLFRSTSFRKGETELVIVVTPYLVKPVD
CCCEEEEEEEECCCCCCCHHCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEECCEEEECCC
GTDIKLPTDGYQTPNELQRTLGFLENDGKTGGDRPKPTAQDRDGPNPAVSRIDPAAVLPA
CCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHCCCC
PKTQKDDRRSAKKSKKSKRDKQRTAAAAPGFSLK
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]