Click here to switch to the map view.

The map label for this gene is traC [H]

Identifier: 85373005

GI number: 85373005

Start: 213189

End: 215738

Strand: Reverse

Name: traC [H]

Synonym: ELI_00890

Alternate gene names: 85373005

Gene position: 215738-213189 (Counterclockwise)

Preceding gene: 85373006

Following gene: 85373004

Centisome position: 7.07

GC content: 65.53

Gene sequence:

>2550_bases
ATGAACCGTTCGCTCGCCTCGGCGCGCGACGCGCTGCTCTCCGGCCTGTTCGGCGATGCGCGGCAGGCCGACCATGCCCG
GCCGAGCTTCGCGCTCGACATGCTCTCGGACTGGCTCCCCTACCGCGTGTACGATGAAGGGCCGGGTCTCTATCGCAACG
CGCATTCGAAGGGCTTCGTGCTCGAAGTGACCCCGCTGATCGGGGCGGACGAACGCACCGGCGAAATCCTCGGGCAGTTC
TTCTCCGAGAGCCTGCCGCAGGGCGCCTGCTTGCAGGTCCTGAACTTCGCTTCCCCCCGGATCGGAGCGATCGTCGGACC
CTGGTTCGGTCCGCGCTACGAGCAGGGCGGGATCTACGAAGCCATCGCCAAGGCGCGGACCAACCGCCTCTACGACCTCG
TCTGGCATTCGGGCTCGGCGCATGCGCCGTTCCACGCGCGCCATGTCCGCCTCGTGTTGTCGCTCGGCGTTCCCGTGCCC
GGGAGCGTCACCGACGCCGAGCTGACCGAATGCCGCGACGGGATGGCAGGGATGCTCAATTCGCTGGGTCTTGCCTCCAA
CCGGCTCGAACCGGCCGGACTTCTCGCGCTGATCGACGAGCTGACCTCGCCGACCACCGCGCGCGAGCTCGATCTTACGC
ACTGGAACCGCGAGGACACGCTCGACGTCCAGGCGATCCGCCGCGATATAGAACTTGAGGTCGAGGACGACCGGCTGATC
CTCCGGACCGAGCGGTTCCGCGAGACCGGACGCAGCCGCGACGGTATTCCCCAGATGGGCACCTGCTATCCCGACCGCTT
CGACGTGCGCCATTACGGCGTTCGTTCGACCCCCGAGCGCTGGGCACCGTGGGAATGCGCGCGGCTCATCGGCGACATGT
TCACCGACAAGCTGCGCTTTCCCTGTCCCGCCGCGACCATGTTGTGCCTCCACTATCCCGACCAGGAAGCGGCCTCGGCG
CGCGCAGGCTACAAGTTCATGCGCACTACCAGCCTGTCGGAGACCAGGAGCGCGCGCTTCCTGCCGAGGCTTTCTGAGCA
ATCGGCCGAATGGAAGCATGTCCAGGCCGAGCTCCAGGCGGGCAAGAAGCTGGTCAAGTTGTTCTACGGACTCACCACCA
TCTCGCCGTTGGGGGATGGCGACGCGCACGAACGCACGGTCAAGGCGATCTACAAGGCCGCCGGTTGGGACCTCGCCGAC
GAACGTTTCCTCCAGTTGCAGGGTCTCGTCGCGGCCTTCCCGCTGAGCCTTGCCGACGGGCTGGTCCACGACCTTGCGCG
CCTTAAGCGCTTCCGCACCATGCTCTCGACCACCGCGGCGAACATCGCCCCGCTGCAGGGCGAGTATCTCGGCGGCGCAA
TCCCGCATCTGCTGCTCCTGGGACGACGCGGCCAGCCCTTCTGGTGGTCGCCATTCGAAAACACTGCCGGCAATCACAAT
ATAGCGATCTGCGGCAAGTCGGGCTCGGGCAAGTCGGTACTGCTGCAGGAGCTCTGCACAGCGCTCCGCGGTGCGGGCGC
CAAGGTCGTGGTGATCGACGACGGGCGCAGCTTCGAGCATTCGGTCAAACTGCAGGGCGGACGCTTCGTCGAGTTCACGC
TCGCCTCGGGCTTTTCCCTGAACCCATTCTCGATGGTCGACGATGCCCGCGCGCACGAAGACGAGGATTACCGCCTCGAC
TGCTTCGCCATGATCAAGGCAATCGTTGGCCAGATGGCACGGCCGAGTGCAGCCCCCTTGGACACCGAGCGCGGCCTCAT
CGACCGGGCAGTGACGCAGGTCTGGGAAGCGCTCGGCAGCGGCGGCGCGATCGACGATGTCGCACATACACTCCATCAAA
GCGAGAACGAGGCGGGCAAGGATTTGGCGACTGCGATCGCGCCCTTCTGCCGCGGTGGCAGCTATGCCGGGTTCTTTTCC
GGCAAGGCGAGTTTCGCGCTTGAGGACGATTTCACCGTCTTCGAGATGAGCGATCTCGCGAGCCGCGAGGAACTGCGAAG
CGTCGTCCTTTCGGCGATCATGTTTATGACCGGCCAGGCGATGACGCGGAGTTCGCGCAGCACCAAGAAACTGCTGCTGA
TCGATGAAGCCTGGGCGATGCTCAAGGGCGGCTCGATGGGCGAGTTCGTCGAGACCTACGCCCGCACCGCACGCAAATAT
GGCGGCGCGCTCGCCACCGCCACCCAGTCGCTCAATGACTATTACAAGTCCGATGGCGCGCGCGCCGCGCTCGAGAACAG
CGACTGGATGCTGGTGCTCCAGCAGAAGCCCGAGACCATTGCCGATTTCCGCAAGGAAGCCCGGCTCGACATGGACGACC
GCACCGAAACGCTGATCCGCAGCCTCAAGCGCTCGGGCAGTGAATACAGCGAGATCTACCTGAAGGGTCCCGAGGTTGAA
GCCGTCGGGCGGCTCGTGCTCGATCCGCTCTCGGCGACGATCTTCTCCTCCGATCCCGACACCTATGCCGCGATCCGCCG
CCATGTCGAAAGCGGCATGCCGCTCGAACGCGCGGTCGCGCTCGTCGCCGGCGTGGAAGGAGGCGCATGA

Upstream 100 bases:

>100_bases
CCGGCGTTCCGGCGCCGGTCACCGGGGCACCTGGCCGTCTCCCCTCCCCCGGCTGGGTGCCCCACCCCCTTTCGCCTGGC
GAACCCGAAGGAGAGAGCCA

Downstream 100 bases:

>100_bases
TGGTGCTCGAGACCACCACGCTCGTCGACCGCGTGCCGCTTCCGACTGCCAAACGCGCCCGCGAAAAGCATCGCGCCGTA
AACTGGCTCGCGCTGTTCCA

Product: putative inner-membrane protein traC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 849; Mature: 849

Protein sequence:

>849_residues
MNRSLASARDALLSGLFGDARQADHARPSFALDMLSDWLPYRVYDEGPGLYRNAHSKGFVLEVTPLIGADERTGEILGQF
FSESLPQGACLQVLNFASPRIGAIVGPWFGPRYEQGGIYEAIAKARTNRLYDLVWHSGSAHAPFHARHVRLVLSLGVPVP
GSVTDAELTECRDGMAGMLNSLGLASNRLEPAGLLALIDELTSPTTARELDLTHWNREDTLDVQAIRRDIELEVEDDRLI
LRTERFRETGRSRDGIPQMGTCYPDRFDVRHYGVRSTPERWAPWECARLIGDMFTDKLRFPCPAATMLCLHYPDQEAASA
RAGYKFMRTTSLSETRSARFLPRLSEQSAEWKHVQAELQAGKKLVKLFYGLTTISPLGDGDAHERTVKAIYKAAGWDLAD
ERFLQLQGLVAAFPLSLADGLVHDLARLKRFRTMLSTTAANIAPLQGEYLGGAIPHLLLLGRRGQPFWWSPFENTAGNHN
IAICGKSGSGKSVLLQELCTALRGAGAKVVVIDDGRSFEHSVKLQGGRFVEFTLASGFSLNPFSMVDDARAHEDEDYRLD
CFAMIKAIVGQMARPSAAPLDTERGLIDRAVTQVWEALGSGGAIDDVAHTLHQSENEAGKDLATAIAPFCRGGSYAGFFS
GKASFALEDDFTVFEMSDLASREELRSVVLSAIMFMTGQAMTRSSRSTKKLLLIDEAWAMLKGGSMGEFVETYARTARKY
GGALATATQSLNDYYKSDGARAALENSDWMLVLQQKPETIADFRKEARLDMDDRTETLIRSLKRSGSEYSEIYLKGPEVE
AVGRLVLDPLSATIFSSDPDTYAAIRRHVESGMPLERAVALVAGVEGGA

Sequences:

>Translated_849_residues
MNRSLASARDALLSGLFGDARQADHARPSFALDMLSDWLPYRVYDEGPGLYRNAHSKGFVLEVTPLIGADERTGEILGQF
FSESLPQGACLQVLNFASPRIGAIVGPWFGPRYEQGGIYEAIAKARTNRLYDLVWHSGSAHAPFHARHVRLVLSLGVPVP
GSVTDAELTECRDGMAGMLNSLGLASNRLEPAGLLALIDELTSPTTARELDLTHWNREDTLDVQAIRRDIELEVEDDRLI
LRTERFRETGRSRDGIPQMGTCYPDRFDVRHYGVRSTPERWAPWECARLIGDMFTDKLRFPCPAATMLCLHYPDQEAASA
RAGYKFMRTTSLSETRSARFLPRLSEQSAEWKHVQAELQAGKKLVKLFYGLTTISPLGDGDAHERTVKAIYKAAGWDLAD
ERFLQLQGLVAAFPLSLADGLVHDLARLKRFRTMLSTTAANIAPLQGEYLGGAIPHLLLLGRRGQPFWWSPFENTAGNHN
IAICGKSGSGKSVLLQELCTALRGAGAKVVVIDDGRSFEHSVKLQGGRFVEFTLASGFSLNPFSMVDDARAHEDEDYRLD
CFAMIKAIVGQMARPSAAPLDTERGLIDRAVTQVWEALGSGGAIDDVAHTLHQSENEAGKDLATAIAPFCRGGSYAGFFS
GKASFALEDDFTVFEMSDLASREELRSVVLSAIMFMTGQAMTRSSRSTKKLLLIDEAWAMLKGGSMGEFVETYARTARKY
GGALATATQSLNDYYKSDGARAALENSDWMLVLQQKPETIADFRKEARLDMDDRTETLIRSLKRSGSEYSEIYLKGPEVE
AVGRLVLDPLSATIFSSDPDTYAAIRRHVESGMPLERAVALVAGVEGGA
>Mature_849_residues
MNRSLASARDALLSGLFGDARQADHARPSFALDMLSDWLPYRVYDEGPGLYRNAHSKGFVLEVTPLIGADERTGEILGQF
FSESLPQGACLQVLNFASPRIGAIVGPWFGPRYEQGGIYEAIAKARTNRLYDLVWHSGSAHAPFHARHVRLVLSLGVPVP
GSVTDAELTECRDGMAGMLNSLGLASNRLEPAGLLALIDELTSPTTARELDLTHWNREDTLDVQAIRRDIELEVEDDRLI
LRTERFRETGRSRDGIPQMGTCYPDRFDVRHYGVRSTPERWAPWECARLIGDMFTDKLRFPCPAATMLCLHYPDQEAASA
RAGYKFMRTTSLSETRSARFLPRLSEQSAEWKHVQAELQAGKKLVKLFYGLTTISPLGDGDAHERTVKAIYKAAGWDLAD
ERFLQLQGLVAAFPLSLADGLVHDLARLKRFRTMLSTTAANIAPLQGEYLGGAIPHLLLLGRRGQPFWWSPFENTAGNHN
IAICGKSGSGKSVLLQELCTALRGAGAKVVVIDDGRSFEHSVKLQGGRFVEFTLASGFSLNPFSMVDDARAHEDEDYRLD
CFAMIKAIVGQMARPSAAPLDTERGLIDRAVTQVWEALGSGGAIDDVAHTLHQSENEAGKDLATAIAPFCRGGSYAGFFS
GKASFALEDDFTVFEMSDLASREELRSVVLSAIMFMTGQAMTRSSRSTKKLLLIDEAWAMLKGGSMGEFVETYARTARKY
GGALATATQSLNDYYKSDGARAALENSDWMLVLQQKPETIADFRKEARLDMDDRTETLIRSLKRSGSEYSEIYLKGPEVE
AVGRLVLDPLSATIFSSDPDTYAAIRRHVESGMPLERAVALVAGVEGGA

Specific function: Required for the assembly of mature F-pilin subunits into extended F pili [H]

COG id: COG3451

COG function: function code U; Type IV secretory pathway, VirB4 components

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002789
- InterPro:   IPR014117 [H]

Pfam domain/function: PF01935 DUF87 [H]

EC number: NA

Molecular weight: Translated: 93313; Mature: 93313

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRSLASARDALLSGLFGDARQADHARPSFALDMLSDWLPYRVYDEGPGLYRNAHSKGFV
CCCCHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEE
LEVTPLIGADERTGEILGQFFSESLPQGACLQVLNFASPRIGAIVGPWFGPRYEQGGIYE
EEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHH
AIAKARTNRLYDLVWHSGSAHAPFHARHVRLVLSLGVPVPGSVTDAELTECRDGMAGMLN
HHHHHHHHHHEEEEECCCCCCCCCHHHHHEEHEEECCCCCCCCCHHHHHHHHHHHHHHHH
SLGLASNRLEPAGLLALIDELTSPTTARELDLTHWNREDTLDVQAIRRDIELEVEDDRLI
HCCCCCCCCCHHHHHHHHHHHCCCCCHHEECCCCCCCCCCHHHHHHHHCCCEEECCCEEE
LRTERFRETGRSRDGIPQMGTCYPDRFDVRHYGVRSTPERWAPWECARLIGDMFTDKLRF
EEHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
PCPAATMLCLHYPDQEAASARAGYKFMRTTSLSETRSARFLPRLSEQSAEWKHVQAELQA
CCCHHHEEEEECCCHHHHHHHHCCHHHHHCCHHHHHHHHHCHHHHHCCHHHHHHHHHHHH
GKKLVKLFYGLTTISPLGDGDAHERTVKAIYKAAGWDLADERFLQLQGLVAAFPLSLADG
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LVHDLARLKRFRTMLSTTAANIAPLQGEYLGGAIPHLLLLGRRGQPFWWSPFENTAGNHN
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCE
IAICGKSGSGKSVLLQELCTALRGAGAKVVVIDDGRSFEHSVKLQGGRFVEFTLASGFSL
EEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEECCCEEEEEEECCCCCC
NPFSMVDDARAHEDEDYRLDCFAMIKAIVGQMARPSAAPLDTERGLIDRAVTQVWEALGS
CCHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCC
GGAIDDVAHTLHQSENEAGKDLATAIAPFCRGGSYAGFFSGKASFALEDDFTVFEMSDLA
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCEEECCCCEEEEHHHHH
SREELRSVVLSAIMFMTGQAMTRSSRSTKKLLLIDEAWAMLKGGSMGEFVETYARTARKY
HHHHHHHHHHHHHHHHHCHHHHHCCCCCCEEEEEEHHHHHHCCCCHHHHHHHHHHHHHHH
GGALATATQSLNDYYKSDGARAALENSDWMLVLQQKPETIADFRKEARLDMDDRTETLIR
CCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHH
SLKRSGSEYSEIYLKGPEVEAVGRLVLDPLSATIFSSDPDTYAAIRRHVESGMPLERAVA
HHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHCCCCHHHHHH
LVAGVEGGA
HHHCCCCCC
>Mature Secondary Structure
MNRSLASARDALLSGLFGDARQADHARPSFALDMLSDWLPYRVYDEGPGLYRNAHSKGFV
CCCCHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEE
LEVTPLIGADERTGEILGQFFSESLPQGACLQVLNFASPRIGAIVGPWFGPRYEQGGIYE
EEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHH
AIAKARTNRLYDLVWHSGSAHAPFHARHVRLVLSLGVPVPGSVTDAELTECRDGMAGMLN
HHHHHHHHHHEEEEECCCCCCCCCHHHHHEEHEEECCCCCCCCCHHHHHHHHHHHHHHHH
SLGLASNRLEPAGLLALIDELTSPTTARELDLTHWNREDTLDVQAIRRDIELEVEDDRLI
HCCCCCCCCCHHHHHHHHHHHCCCCCHHEECCCCCCCCCCHHHHHHHHCCCEEECCCEEE
LRTERFRETGRSRDGIPQMGTCYPDRFDVRHYGVRSTPERWAPWECARLIGDMFTDKLRF
EEHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
PCPAATMLCLHYPDQEAASARAGYKFMRTTSLSETRSARFLPRLSEQSAEWKHVQAELQA
CCCHHHEEEEECCCHHHHHHHHCCHHHHHCCHHHHHHHHHCHHHHHCCHHHHHHHHHHHH
GKKLVKLFYGLTTISPLGDGDAHERTVKAIYKAAGWDLADERFLQLQGLVAAFPLSLADG
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LVHDLARLKRFRTMLSTTAANIAPLQGEYLGGAIPHLLLLGRRGQPFWWSPFENTAGNHN
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCE
IAICGKSGSGKSVLLQELCTALRGAGAKVVVIDDGRSFEHSVKLQGGRFVEFTLASGFSL
EEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEECCCEEEEEEECCCCCC
NPFSMVDDARAHEDEDYRLDCFAMIKAIVGQMARPSAAPLDTERGLIDRAVTQVWEALGS
CCHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCC
GGAIDDVAHTLHQSENEAGKDLATAIAPFCRGGSYAGFFSGKASFALEDDFTVFEMSDLA
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCEEECCCCEEEEHHHHH
SREELRSVVLSAIMFMTGQAMTRSSRSTKKLLLIDEAWAMLKGGSMGEFVETYARTARKY
HHHHHHHHHHHHHHHHHCHHHHHCCCCCCEEEEEEHHHHHHCCCCHHHHHHHHHHHHHHH
GGALATATQSLNDYYKSDGARAALENSDWMLVLQQKPETIADFRKEARLDMDDRTETLIR
CCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHH
SLKRSGSEYSEIYLKGPEVEAVGRLVLDPLSATIFSSDPDTYAAIRRHVESGMPLERAVA
HHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHCCCCHHHHHH
LVAGVEGGA
HHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2265751; 7915817; 1355084 [H]