Click here to switch to the map view.

The map label for this gene is yjbJ [H]

Identifier: 85372953

GI number: 85372953

Start: 158949

End: 159497

Strand: Reverse

Name: yjbJ [H]

Synonym: ELI_00630

Alternate gene names: 85372953

Gene position: 159497-158949 (Counterclockwise)

Preceding gene: 85372962

Following gene: 85372952

Centisome position: 5.23

GC content: 58.47

Gene sequence:

>549_bases
ATTGCGATCTCTGGATCTGCCTGCGCGCAGGAATTTCAGGTTTTCGACCATGAACTTAGCAAGGTTGAGGTTACAAGCGA
CCAAGGTCCCGGTGTCCACCCAACTGCGTTCTATCTCGGCAAGCCAGATGGCGAACCGGATCATATCGATCGAAGCTTCA
AGGAAGCCCTGTACGAGCCACTCATTCGGCAAGCAGAAGCGCGATACTCGCTCCCCCCTCGCCTCCTCCTGGCTCTGGTG
TGGCAAGAATCTCGCTTCAATCCCATGGCAATCAGTCCGGCTGGCGCGGCGGGGCTCGCTCAACTCATGCCGGGAACCGC
GAGGCAACTTGGTGTCAGCAATCGCCACGATCCGGTTCAGAACATCGACGGTGGCGCGCGGTATCTGAAGCAGATGCTCG
ATCGCTTCGGCGCGATCCATCTCGCGCTGGCCGCTTACAACGCAGGCCCTGGCGCTGTGTCGCGAGCCGGCGGGATACCG
AAAAATCGAGAAACACCTGGATATGTGAAGAGCGTTATCGCGCGATGGATGGCATACAGCTCGACATGA

Upstream 100 bases:

>100_bases
CACCTCAGTGTTCTACTTATGTTCTCGCACGAGTCGAAACAAGGCGAAAGGTAGTGCGATGAGAATGTCCTTGGTGACCT
GTGGGTGCGGTGCCTTTGCG

Downstream 100 bases:

>100_bases
ATGCGAATCGGAAAAGGATCAGCGGACGGCTCGAGCACCTTCCTCGGGGAGCTGCAATTGTAACTGATGCAGGGGATCAC
TGGGTTCTCGAGGGCTTTGA

Product: lytic transglycosylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MAISGSACAQEFQVFDHELSKVEVTSDQGPGVHPTAFYLGKPDGEPDHIDRSFKEALYEPLIRQAEARYSLPPRLLLALV
WQESRFNPMAISPAGAAGLAQLMPGTARQLGVSNRHDPVQNIDGGARYLKQMLDRFGAIHLALAAYNAGPGAVSRAGGIP
KNRETPGYVKSVIARWMAYSST

Sequences:

>Translated_182_residues
MAISGSACAQEFQVFDHELSKVEVTSDQGPGVHPTAFYLGKPDGEPDHIDRSFKEALYEPLIRQAEARYSLPPRLLLALV
WQESRFNPMAISPAGAAGLAQLMPGTARQLGVSNRHDPVQNIDGGARYLKQMLDRFGAIHLALAAYNAGPGAVSRAGGIP
KNRETPGYVKSVIARWMAYSST
>Mature_181_residues
AISGSACAQEFQVFDHELSKVEVTSDQGPGVHPTAFYLGKPDGEPDHIDRSFKEALYEPLIRQAEARYSLPPRLLLALVW
QESRFNPMAISPAGAAGLAQLMPGTARQLGVSNRHDPVQNIDGGARYLKQMLDRFGAIHLALAAYNAGPGAVSRAGGIPK
NRETPGYVKSVIARWMAYSST

Specific function: Unknown

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transglycosylase slt family [H]

Homologues:

Organism=Escherichia coli, GI87082441, Length=152, Percent_Identity=36.1842105263158, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI171474010, Length=124, Percent_Identity=37.0967741935484, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082191, Length=150, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01464 SLT [H]

EC number: NA

Molecular weight: Translated: 19691; Mature: 19559

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAISGSACAQEFQVFDHELSKVEVTSDQGPGVHPTAFYLGKPDGEPDHIDRSFKEALYEP
CCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH
LIRQAEARYSLPPRLLLALVWQESRFNPMAISPAGAAGLAQLMPGTARQLGVSNRHDPVQ
HHHHHHHCCCCCHHHHHHHHHHHCCCCCEEECCCCHHHHHHHCCCHHHHHCCCCCCCCHH
NIDGGARYLKQMLDRFGAIHLALAAYNAGPGAVSRAGGIPKNRETPGYVKSVIARWMAYS
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHC
ST
CC
>Mature Secondary Structure 
AISGSACAQEFQVFDHELSKVEVTSDQGPGVHPTAFYLGKPDGEPDHIDRSFKEALYEP
CCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH
LIRQAEARYSLPPRLLLALVWQESRFNPMAISPAGAAGLAQLMPGTARQLGVSNRHDPVQ
HHHHHHHCCCCCHHHHHHHHHHHCCCCCEEECCCCHHHHHHHCCCHHHHHCCCCCCCCHH
NIDGGARYLKQMLDRFGAIHLALAAYNAGPGAVSRAGGIPKNRETPGYVKSVIARWMAYS
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHC
ST
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]