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The map label for this gene is 85372861

Identifier: 85372861

GI number: 85372861

Start: 44994

End: 45587

Strand: Reverse

Name: 85372861

Synonym: ELI_00170

Alternate gene names: NA

Gene position: 45587-44994 (Counterclockwise)

Preceding gene: 85372867

Following gene: 85372860

Centisome position: 1.49

GC content: 64.31

Gene sequence:

>594_bases
ATGCTACGCCTTCCATCCTGTGCCGCAATCGCCCTGGCCCTGACACTGGCCGCTTGCAATGGCGAGCAAGCACCGCCGCC
GGAAGCTCCGCTCGCCGGATCGACCATCGGCGGCGATTTCGAACTAACGAGCGAAAGCGGGGACACTGTCAACTGGTCCG
ATTTCGACGGGCAATACAGGATCGTCTACTTCGGCTACGCCTATTGCCCCGACATCTGCCCTACCGATGTCCAGCGGGCG
ATGGCCGGTTTGCGCCAGTTCGAGCAGGACAATCCTGCGCTTGGCGCGCAAATCCAGCCGCTATTCGTCAGCATCGATCC
CGAGCGCGACACGCAGGAAGTCGTCGCCGAATTCACCGACGCCTTTCACCCGCGCCTGATCGGCTTGACCGGCACGCCGG
AACAGATCGAGCAGGCCGCCAGCGCCTTCAAGGTCTTCTATGCCCGCGGCGAGGACCAGCCGGGTGGCGGGTACCTGATG
GACCATTCCAACATCACCTACCTCTTCGGCCCCGATGGCGAGCCCATTGCGACGCTGCCGACCGACCAGGGTGCCGATGC
AGTCGCCACCGAGCTCGCCCTGTGGGTGCGCTGA

Upstream 100 bases:

>100_bases
AACAGGTGCTGACACCTTTGCAGTCTCCGCAAAAACTCTATGTGAATGGGCAGACTCGCCCTTGTCGTCACGCAGTTAGC
AGACCCTGAACAGAACCGCC

Downstream 100 bases:

>100_bases
GGGACCGCTTCTGGGAGTTGCCCCTGGCCGACCTGAGCGAGCCGGAGTGGGAGGCTCTGTGCGACGGGTGCGGGCGATGC
TGCCTGCACAAGATCGAGGA

Product: electron transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MLRLPSCAAIALALTLAACNGEQAPPPEAPLAGSTIGGDFELTSESGDTVNWSDFDGQYRIVYFGYAYCPDICPTDVQRA
MAGLRQFEQDNPALGAQIQPLFVSIDPERDTQEVVAEFTDAFHPRLIGLTGTPEQIEQAASAFKVFYARGEDQPGGGYLM
DHSNITYLFGPDGEPIATLPTDQGADAVATELALWVR

Sequences:

>Translated_197_residues
MLRLPSCAAIALALTLAACNGEQAPPPEAPLAGSTIGGDFELTSESGDTVNWSDFDGQYRIVYFGYAYCPDICPTDVQRA
MAGLRQFEQDNPALGAQIQPLFVSIDPERDTQEVVAEFTDAFHPRLIGLTGTPEQIEQAASAFKVFYARGEDQPGGGYLM
DHSNITYLFGPDGEPIATLPTDQGADAVATELALWVR
>Mature_197_residues
MLRLPSCAAIALALTLAACNGEQAPPPEAPLAGSTIGGDFELTSESGDTVNWSDFDGQYRIVYFGYAYCPDICPTDVQRA
MAGLRQFEQDNPALGAQIQPLFVSIDPERDTQEVVAEFTDAFHPRLIGLTGTPEQIEQAASAFKVFYARGEDQPGGGYLM
DHSNITYLFGPDGEPIATLPTDQGADAVATELALWVR

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=162, Percent_Identity=37.6543209876543, Blast_Score=134, Evalue=6e-32,
Organism=Homo sapiens, GI281182727, Length=162, Percent_Identity=38.8888888888889, Blast_Score=130, Evalue=1e-30,
Organism=Homo sapiens, GI281182722, Length=162, Percent_Identity=38.8888888888889, Blast_Score=130, Evalue=1e-30,
Organism=Homo sapiens, GI281182716, Length=162, Percent_Identity=38.8888888888889, Blast_Score=130, Evalue=1e-30,
Organism=Homo sapiens, GI153791313, Length=162, Percent_Identity=38.8888888888889, Blast_Score=130, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17531419, Length=177, Percent_Identity=29.9435028248588, Blast_Score=107, Evalue=3e-24,
Organism=Saccharomyces cerevisiae, GI6319498, Length=145, Percent_Identity=38.6206896551724, Blast_Score=118, Evalue=7e-28,
Organism=Saccharomyces cerevisiae, GI6319511, Length=167, Percent_Identity=31.7365269461078, Blast_Score=108, Evalue=5e-25,
Organism=Drosophila melanogaster, GI19920710, Length=171, Percent_Identity=37.4269005847953, Blast_Score=136, Evalue=9e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 21178; Mature: 21178

Theoretical pI: Translated: 3.83; Mature: 3.83

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLPSCAAIALALTLAACNGEQAPPPEAPLAGSTIGGDFELTSESGDTVNWSDFDGQYR
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEE
IVYFGYAYCPDICPTDVQRAMAGLRQFEQDNPALGAQIQPLFVSIDPERDTQEVVAEFTD
EEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHH
AFHPRLIGLTGTPEQIEQAASAFKVFYARGEDQPGGGYLMDHSNITYLFGPDGEPIATLP
CCCCEEEECCCCHHHHHHHHHHHHHHEECCCCCCCCCEEEECCCEEEEECCCCCEEEECC
TDQGADAVATELALWVR
CCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MLRLPSCAAIALALTLAACNGEQAPPPEAPLAGSTIGGDFELTSESGDTVNWSDFDGQYR
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEE
IVYFGYAYCPDICPTDVQRAMAGLRQFEQDNPALGAQIQPLFVSIDPERDTQEVVAEFTD
EEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHH
AFHPRLIGLTGTPEQIEQAASAFKVFYARGEDQPGGGYLMDHSNITYLFGPDGEPIATLP
CCCCEEEECCCCHHHHHHHHHHHHHHEECCCCCCCCCEEEECCCEEEEECCCCCEEEECC
TDQGADAVATELALWVR
CCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA