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The map label for this gene is rraB

Identifier: 85060090

GI number: 85060090

Start: 3656198

End: 3656638

Strand: Reverse

Name: rraB

Synonym: SG2112

Alternate gene names: 85060090

Gene position: 3656638-3656198 (Counterclockwise)

Preceding gene: 85060092

Following gene: 85060086

Centisome position: 87.67

GC content: 55.1

Gene sequence:

>441_bases
ATGGCACATTCATTTCTTGACGAGCAACGCGAAGAGACGCGTCTGATTATTGACGAGCTGCTGGAAGACGGCAGCGATCC
CGAGGCGCTTTACACTATCGAACATCATCTCTCCGCAGACGATTTTGACACCCTGGAGAAGGTGGCGGTAGAGGCCTTCA
AACTGGGTTATGAAGTAACCGATGCCGAAGAGCTTGAAGTTGAAGGCGGCGAAAAGCTGATGTGCTGCGATGCGGTTAGT
GAAATCGCGCTGCAGGCGGAACTTATCGATGCGCAGGTGGAGCAGTTGTTCACCCTGACGCAGCGCTTAGAGGTGAATTA
CGACGGCTGGGGCACATACTTTGAAGATCCCGACGGCGAAGAGGAAGAAGGTGACGAGTTCGATCAGGATGACGAAGACG
GCCCGGCGGACAGAGACGAGGTGCCCGCCACCCGCCATTAA

Upstream 100 bases:

>100_bases
TTAAAGTGCTGATGGCAAATCTTTTACCATTAAGCTGGAGCCGCACCCGCCGCTGTGTGAAAATAGTCATCCTACAGGCC
GACGTATTGAGGACAGGGAC

Downstream 100 bases:

>100_bases
TTGCCCCCGCCGCGGTCGGCTGAAAGAGGACGCGAATACGACCGTTGCCGGCGCTATTTGCGTTCACTGCAGATGGTTAT
AACGTTTTCAACATGATGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MAHSFLDEQREETRLIIDELLEDGSDPEALYTIEHHLSADDFDTLEKVAVEAFKLGYEVTDAEELEVEGGEKLMCCDAVS
EIALQAELIDAQVEQLFTLTQRLEVNYDGWGTYFEDPDGEEEEGDEFDQDDEDGPADRDEVPATRH

Sequences:

>Translated_146_residues
MAHSFLDEQREETRLIIDELLEDGSDPEALYTIEHHLSADDFDTLEKVAVEAFKLGYEVTDAEELEVEGGEKLMCCDAVS
EIALQAELIDAQVEQLFTLTQRLEVNYDGWGTYFEDPDGEEEEGDEFDQDDEDGPADRDEVPATRH
>Mature_145_residues
AHSFLDEQREETRLIIDELLEDGSDPEALYTIEHHLSADDFDTLEKVAVEAFKLGYEVTDAEELEVEGGEKLMCCDAVSE
IALQAELIDAQVEQLFTLTQRLEVNYDGWGTYFEDPDGEEEEGDEFDQDDEDGPADRDEVPATRH

Specific function: Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome

COG id: COG3076

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraB family

Homologues:

Organism=Escherichia coli, GI1790704, Length=114, Percent_Identity=78.0701754385965, Blast_Score=181, Evalue=2e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRAB_SODGM (Q2NR38)

Other databases:

- EMBL:   AP008232
- RefSeq:   YP_455792.1
- ProteinModelPortal:   Q2NR38
- SMR:   Q2NR38
- STRING:   Q2NR38
- GeneID:   3866253
- GenomeReviews:   AP008232_GR
- KEGG:   sgl:SG2112
- NMPDR:   fig|343509.6.peg.4622
- eggNOG:   COG3076
- HOGENOM:   HBG297993
- OMA:   YTIEHHF
- PhylomeDB:   Q2NR38
- ProtClustDB:   PRK11191
- BioCyc:   SGLO343509:SG2112-MONOMER
- HAMAP:   MF_01888
- InterPro:   IPR009671
- InterPro:   IPR016716
- Gene3D:   G3DSA:3.30.70.970
- PIRSF:   PIRSF018193

Pfam domain/function: PF06877 DUF1260; SSF89946 DUF1260

EC number: NA

Molecular weight: Translated: 16562; Mature: 16431

Theoretical pI: Translated: 3.57; Mature: 3.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHSFLDEQREETRLIIDELLEDGSDPEALYTIEHHLSADDFDTLEKVAVEAFKLGYEVT
CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
DAEELEVEGGEKLMCCDAVSEIALQAELIDAQVEQLFTLTQRLEVNYDGWGTYFEDPDGE
CCHHEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
EEEGDEFDQDDEDGPADRDEVPATRH
CCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AHSFLDEQREETRLIIDELLEDGSDPEALYTIEHHLSADDFDTLEKVAVEAFKLGYEVT
CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
DAEELEVEGGEKLMCCDAVSEIALQAELIDAQVEQLFTLTQRLEVNYDGWGTYFEDPDGE
CCHHEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
EEEGDEFDQDDEDGPADRDEVPATRH
CCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA