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The map label for this gene is flhC [H]

Identifier: 85060045

GI number: 85060045

Start: 3571105

End: 3571686

Strand: Reverse

Name: flhC [H]

Synonym: SG2067

Alternate gene names: 85060045

Gene position: 3571686-3571105 (Counterclockwise)

Preceding gene: 85060046

Following gene: 85060044

Centisome position: 85.63

GC content: 52.75

Gene sequence:

>582_bases
ATGGCCGAAAAAAGTATTGTCCAAGAGGTAAAAGAAATCCAGCTTGCAATGGAGTTGATTTCTCTTGGCGCACGGTTGCA
GATGCTGGAAAGTGAAACACAACTTAGCCGGGGCCGGTTGATAAAGCTTTACAAGGAGATTCGCGGTAATCCGCCTCCGA
AGGGGATGCTGCCGTTCTCCACCGATTGGTTTATGACCTGGGAACACAATATTCACTCGTCGATGTTCTACAACATCTAC
CAGGTGCTGCTGAATCACGGGTGTTGCTCGTGGGTGGAGGCGGTGATTGGCGCCTATCGCCTCTATCTGGAGCAGTGCCC
GGAGCAGGATGGCGATATTCCGCTTTTGGCGCTGACCCGCGCCTGGACGCTGGTAAAATTCGTCGACAGCGGCATGCTGC
AACTGACCCCCTGTGCACATTGTCATGGACATTTCATCACCTACGCCCACCAGCCAAGCCAGAGTTTTGTGTGCAGTCTC
TGCCAGCCGCCGTCGCGGGCGGTAAAAAGACGTAAACTTTTGCCTGATGCTGCCGATAATAGTTCTATGTTGTCAGATGA
GCGGAAAAGTGTCGCGGTATGA

Upstream 100 bases:

>100_bases
AAGATCTTAATCAAATACATGCCAGTATTTTATTGTCCAGTCGATTAAATGAGCAATTAACCACGAAAGCTGGCTCAACG
CCTAAAAGAAAGAGTTAAAC

Downstream 100 bases:

>100_bases
CCGCCTGCGGCAGCTGGGTGTCTGCCGCCACGCCGCCACGGAGAAGAAGGGGGTAGCTAAGGGTGCCAGCCGGGTCGCTT
TTGCTTGCCTGCTCTTCGCT

Product: transcriptional activator FlhC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MAEKSIVQEVKEIQLAMELISLGARLQMLESETQLSRGRLIKLYKEIRGNPPPKGMLPFSTDWFMTWEHNIHSSMFYNIY
QVLLNHGCCSWVEAVIGAYRLYLEQCPEQDGDIPLLALTRAWTLVKFVDSGMLQLTPCAHCHGHFITYAHQPSQSFVCSL
CQPPSRAVKRRKLLPDAADNSSMLSDERKSVAV

Sequences:

>Translated_193_residues
MAEKSIVQEVKEIQLAMELISLGARLQMLESETQLSRGRLIKLYKEIRGNPPPKGMLPFSTDWFMTWEHNIHSSMFYNIY
QVLLNHGCCSWVEAVIGAYRLYLEQCPEQDGDIPLLALTRAWTLVKFVDSGMLQLTPCAHCHGHFITYAHQPSQSFVCSL
CQPPSRAVKRRKLLPDAADNSSMLSDERKSVAV
>Mature_192_residues
AEKSIVQEVKEIQLAMELISLGARLQMLESETQLSRGRLIKLYKEIRGNPPPKGMLPFSTDWFMTWEHNIHSSMFYNIYQ
VLLNHGCCSWVEAVIGAYRLYLEQCPEQDGDIPLLALTRAWTLVKFVDSGMLQLTPCAHCHGHFITYAHQPSQSFVCSLC
QPPSRAVKRRKLLPDAADNSSMLSDERKSVAV

Specific function: Transcriptional activator. Together with flhD it acts as a compound sigma factor that activates class 2 flagellar genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flhC family [H]

Homologues:

Organism=Escherichia coli, GI1788201, Length=193, Percent_Identity=72.5388601036269, Blast_Score=287, Evalue=3e-79,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007944
- ProDom:   PD016592 [H]

Pfam domain/function: PF05280 FlhC [H]

EC number: NA

Molecular weight: Translated: 21926; Mature: 21795

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEKSIVQEVKEIQLAMELISLGARLQMLESETQLSRGRLIKLYKEIRGNPPPKGMLPFS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TDWFMTWEHNIHSSMFYNIYQVLLNHGCCSWVEAVIGAYRLYLEQCPEQDGDIPLLALTR
CCEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
AWTLVKFVDSGMLQLTPCAHCHGHFITYAHQPSQSFVCSLCQPPSRAVKRRKLLPDAADN
HHHHHHHHHCCCEEECCHHHHCCCEEEEEECCCHHHHHHHCCCHHHHHHHHHCCCCCCCC
SSMLSDERKSVAV
CHHHHHHHHHCCC
>Mature Secondary Structure 
AEKSIVQEVKEIQLAMELISLGARLQMLESETQLSRGRLIKLYKEIRGNPPPKGMLPFS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TDWFMTWEHNIHSSMFYNIYQVLLNHGCCSWVEAVIGAYRLYLEQCPEQDGDIPLLALTR
CCEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
AWTLVKFVDSGMLQLTPCAHCHGHFITYAHQPSQSFVCSLCQPPSRAVKRRKLLPDAADN
HHHHHHHHHCCCEEECCHHHHCCCEEEEEECCCHHHHHHHCCCHHHHHHHHHCCCCCCCC
SSMLSDERKSVAV
CHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11060496 [H]