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The map label for this gene is ychO [H]

Identifier: 85059847

GI number: 85059847

Start: 3201441

End: 3202271

Strand: Reverse

Name: ychO [H]

Synonym: SG1869

Alternate gene names: 85059847

Gene position: 3202271-3201441 (Counterclockwise)

Preceding gene: 85059849

Following gene: 85059846

Centisome position: 76.77

GC content: 56.08

Gene sequence:

>831_bases
ATGAACGTCTTTATACCAAACCGGCGGCTTCGCGCCGTCACGTCACCTGTCATTATGAGAGTTTTCTTAGGCACCCTGGC
GGGTAACGCCTTCTTCTGTTCGCTCCCCGCCGCCGCGTGGGTAACCCAGCCGGAAAATGACGCTGCGTTGCTAAGCCAGC
AGCAAGCGCTGCCTAATCTTGGGAGCGCAAGTGTAAACGAAAGCGGTACGGAAAAGAAGTTGGCGACGTTAGCGCGACAA
ATGGCGGAAGTCAACCAGGATGAAAATACCGATCAGACCTGGCGCAGTTATCTGCTGGGGGAGGCGAAGGATCGCGTGTT
GGACCGATTGCAGCAAAAGAGCGAAGCGTTGCTGTCTCCCCTTGGCTACACGACCGTCACCCTTGACGTGGATGAACGCG
GTCGCTTTAACGGCAGTTCTGGTCAGTTATTGCTGCCGCTGGTCGATCAGAAAACGCGCGGTCTGACCTACAGTCAACTA
GGGTTGCAGGGCGTCGATGACGGCGTTGTCGGCAATATGGGCCTCCGCCAACGCTGGAACGCCGGGCGCTGGCTACTGGG
CTACAACGTATTTTATGATCAATACCTGAACCAGGATGCGTCGCGTCGCGGCAGCATCGGTGCGGAAGCGCGCAGCGATT
ATCTCACGCTGTCCTCCAACTATTATTACCCTCTGTCCGGTATGCATGCCGCCAATGATGACGAAGATGAGCTCTTACGC
ATGGCCCGGCTACGATATCACCACCCAAGGATATCTGCCGTTTTATCGCCAGCTGGGCGCGTCGGTAAAATACGAGCACT
ATTTCGGCCAGCGGGTAGATCTTTTCGATAG

Upstream 100 bases:

>100_bases
TGTTAGAGTAAGCGTTATCGGGTTACTTTATGAGCAGTCCGGCAACTTGCCGGTCATCAAAGCAACGGCCACAGCGGCAC
AGCGGCGAACAGAGAGACCC

Downstream 100 bases:

>100_bases
CGGTAATTATCGCTCAAATTCGGCAGCGGTGGAGCTCGGCGTAAGCTATACTCCCGTGCTGCTCATGACGTTGTCCGCTA
AACATAAGTTGGGGGACGGC

Product: putative invasin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MNVFIPNRRLRAVTSPVIMRVFLGTLAGNAFFCSLPAAAWVTQPENDAALLSQQQALPNLGSASVNESGTEKKLATLARQ
MAEVNQDENTDQTWRSYLLGEAKDRVLDRLQQKSEALLSPLGYTTVTLDVDERGRFNGSSGQLLLPLVDQKTRGLTYSQL
GLQGVDDGVVGNMGLRQRWNAGRWLLGYNVFYDQYLNQDASRRGSIGAEARSDYLTLSSNYYYPLSGMHAANDDEDELLR
MARLRYHHPRISAVLSPAGRVGKIRALFRPAGRSFR

Sequences:

>Translated_276_residues
MNVFIPNRRLRAVTSPVIMRVFLGTLAGNAFFCSLPAAAWVTQPENDAALLSQQQALPNLGSASVNESGTEKKLATLARQ
MAEVNQDENTDQTWRSYLLGEAKDRVLDRLQQKSEALLSPLGYTTVTLDVDERGRFNGSSGQLLLPLVDQKTRGLTYSQL
GLQGVDDGVVGNMGLRQRWNAGRWLLGYNVFYDQYLNQDASRRGSIGAEARSDYLTLSSNYYYPLSGMHAANDDEDELLR
MARLRYHHPRISAVLSPAGRVGKIRALFRPAGRSFR
>Mature_276_residues
MNVFIPNRRLRAVTSPVIMRVFLGTLAGNAFFCSLPAAAWVTQPENDAALLSQQQALPNLGSASVNESGTEKKLATLARQ
MAEVNQDENTDQTWRSYLLGEAKDRVLDRLQQKSEALLSPLGYTTVTLDVDERGRFNGSSGQLLLPLVDQKTRGLTYSQL
GLQGVDDGVVGNMGLRQRWNAGRWLLGYNVFYDQYLNQDASRRGSIGAEARSDYLTLSSNYYYPLSGMHAANDDEDELLR
MARLRYHHPRISAVLSPAGRVGKIRALFRPAGRSFR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the intimin/invasin family [H]

Homologues:

Organism=Escherichia coli, GI145693120, Length=191, Percent_Identity=40.3141361256544, Blast_Score=137, Evalue=7e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30700; Mature: 30700

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVFIPNRRLRAVTSPVIMRVFLGTLAGNAFFCSLPAAAWVTQPENDAALLSQQQALPNL
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHEECCCCCCHHHHHHHHHCCCC
GSASVNESGTEKKLATLARQMAEVNQDENTDQTWRSYLLGEAKDRVLDRLQQKSEALLSP
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
LGYTTVTLDVDERGRFNGSSGQLLLPLVDQKTRGLTYSQLGLQGVDDGVVGNMGLRQRWN
CCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHCC
AGRWLLGYNVFYDQYLNQDASRRGSIGAEARSDYLTLSSNYYYPLSGMHAANDDEDELLR
CCCEEEEHHHHHHHHHCCCHHHCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCHHHHHH
MARLRYHHPRISAVLSPAGRVGKIRALFRPAGRSFR
HHHHHHCCCHHHHHHCCCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNVFIPNRRLRAVTSPVIMRVFLGTLAGNAFFCSLPAAAWVTQPENDAALLSQQQALPNL
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHEECCCCCCHHHHHHHHHCCCC
GSASVNESGTEKKLATLARQMAEVNQDENTDQTWRSYLLGEAKDRVLDRLQQKSEALLSP
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
LGYTTVTLDVDERGRFNGSSGQLLLPLVDQKTRGLTYSQLGLQGVDDGVVGNMGLRQRWN
CCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHCC
AGRWLLGYNVFYDQYLNQDASRRGSIGAEARSDYLTLSSNYYYPLSGMHAANDDEDELLR
CCCEEEEHHHHHHHHHCCCHHHCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCHHHHHH
MARLRYHHPRISAVLSPAGRVGKIRALFRPAGRSFR
HHHHHHCCCHHHHHHCCCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 2657652; 2649492; 7567469 [H]