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The map label for this gene is ccmD [H]

Identifier: 85059613

GI number: 85059613

Start: 2795220

End: 2795456

Strand: Reverse

Name: ccmD [H]

Synonym: SG1635

Alternate gene names: 85059613

Gene position: 2795456-2795220 (Counterclockwise)

Preceding gene: 85059614

Following gene: 85059612

Centisome position: 67.02

GC content: 62.87

Gene sequence:

>237_bases
ATGAATCCCGCATTTTCTTCCTGGCCAGCCTTTCTGGCAATGGGCGGTTATGCTTTTTACGTTTGGCTGGCGGTCGCCGC
CACCTTGCTGTCACTAGTGATATTGGTGGCGCAGACCCTCGTCGCGCACAGGCAACTGCTGAACGCTATCCGCCGCCAGC
AGGCGCGTGCCGCAAGGCTGCGCCAGGGCGCCTCTCGCCTCACGACGACGATCCCCCCCCCGGAGAGAGACCAGTGA

Upstream 100 bases:

>100_bases
TTGGCGGTTATCTGTTGTTCTTTATTACCGTGACGCTGATTTTATTCCAGGAGCGTAAACGTCCCTGGGCTATCGCGCTG
GCGCAAAAGGAGCGTCTATG

Downstream 100 bases:

>100_bases
ACCCACGTCGTAAAAGCCGTCTATGTCTTGCGATGGTGGCGGTTATTGGGGCCGCGGTGACGCTACGCGCTGCGCGCCAA
TATCGACCTATTTTATACCC

Product: heme exporter protein D

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CcmD [H]

Number of amino acids: Translated: 78; Mature: 78

Protein sequence:

>78_residues
MNPAFSSWPAFLAMGGYAFYVWLAVAATLLSLVILVAQTLVAHRQLLNAIRRQQARAARLRQGASRLTTTIPPPERDQ

Sequences:

>Translated_78_residues
MNPAFSSWPAFLAMGGYAFYVWLAVAATLLSLVILVAQTLVAHRQLLNAIRRQQARAARLRQGASRLTTTIPPPERDQ
>Mature_78_residues
MNPAFSSWPAFLAMGGYAFYVWLAVAATLLSLVILVAQTLVAHRQLLNAIRRQQARAARLRQGASRLTTTIPPPERDQ

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes [H]

COG id: COG3114

COG function: function code U; Heme exporter protein D

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmD/CycX/HelD family [H]

Homologues:

Organism=Escherichia coli, GI1788526, Length=53, Percent_Identity=52.8301886792453, Blast_Score=66, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007078 [H]

Pfam domain/function: PF04995 CcmD [H]

EC number: NA

Molecular weight: Translated: 8634; Mature: 8634

Theoretical pI: Translated: 12.28; Mature: 12.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPAFSSWPAFLAMGGYAFYVWLAVAATLLSLVILVAQTLVAHRQLLNAIRRQQARAARL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQGASRLTTTIPPPERDQ
HHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNPAFSSWPAFLAMGGYAFYVWLAVAATLLSLVILVAQTLVAHRQLLNAIRRQQARAARL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQGASRLTTTIPPPERDQ
HHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]