Click here to switch to the map view.

The map label for this gene is ydgA [H]

Identifier: 85059438

GI number: 85059438

Start: 2444860

End: 2446341

Strand: Reverse

Name: ydgA [H]

Synonym: SG1460

Alternate gene names: 85059438

Gene position: 2446341-2444860 (Counterclockwise)

Preceding gene: 85059439

Following gene: 85059434

Centisome position: 58.65

GC content: 54.72

Gene sequence:

>1482_bases
ATGAAAAAAAACCTCCTAGCGGTCAGCGTGATCGTCATTCTCGGCGCTGCCTGGACCGGCGGCGCCTGGTACACCGGTAA
ACAGTTTCAGCGCCGGTTGCCAGAGTTGGTCAACGACGTCAACGCCCGATTGCAAAGCACCTTTCCGCAGTCGGGTTTGC
GCTTTGCCGCGGAGAATTACCGGCGCGGTGTATTTACAAGTCATGTCGATGTCGTACTACAGTCCGACGGCACTACCGGC
GATAATAAGCTGTTAAAACCCGGCGAGGACGTGCGCTTTAACGAAAAAGTCGATCATGGTCCCTTTCCGTTTGCCCAATT
GAAAAAAGGCGTATTCATTCCCAGCATGGCCTCTGTACATAGCGTGCTGGCGAAAACCGCCAAAACCCAGCCGCTGTTCG
ACGCCGCCAAAGCCAACGTGCCGATGGTAGCGGAAACCCGCGTCGGCTATAGCGGCAACACGGTATCCAAAATCACCCTG
GCGGCGATGGATTTCCAGGACAATCAAACGGTCATCCGCGCCATCGGCGGGACGTTCGATGTCGCCGCCGATGGCGATAA
ACTGAAGGTGACCGGCGGCATTGATAGCCTGGTGCTGGGCGGGCTCAACCAGTGGCAACAGCGCGAACAGCTGACGTTGC
ACGATTTTAGCGTTGACAACGATACCCACAATGGCAAGCAGGGATATAGCATCGGCGATAACACCCTCAAGGCGCGCACG
CTGGTGTACAACCTGGACAGCAAGGACATTTTAAGCATCGACTCGCTATCTCAGGTGACCCATGCCAAAGAAGATGGCGA
TAAGCTGTCGGTCCAGGTCAATTATGCTCTGGATGCATTGCACATCCAGGGGCAAAACTTTGGCGCCGGCAAGCTGAATA
TCAGCTTGTCCAACCTGGATGGAAAAGCGATTGAAGCGTTCAGCGATAATTATCATCAGCAGGTCGCGCAAATCATGCAG
CAGACGGGGGCAGTTGATCCGCAACAGCAGCAGGCGCAGATTACCCAGGCTTTCTTGCAGCAGTTGCCTACCGCGCTGAA
AGGCAGCCCCTACCTGACCATCGCTCCGCTGAGTTGGAAAAATACCAAAGGAGAAAGCACGTTCACCCTGACGCTTAATC
TTAACGATCCGGCGACGCAGAATCCCGCGTTGACCCCGGATCAACAATGGGCCAGATTCGTCAACAAACTGGACTCCAAA
CTGACCGTTCCGCTGGATATGGCCACCGAAACCACGGCACAGTTCGCCCGGCTGCAGGGTTACAATGAAAAAGACGCTGA
CCAGCTTGCCAAGCAGCAGGTTCAAGGTTTGGCCGCTATGGGTCAGATGTTCAAATTGACCACAGTGGCGGACAATACTT
TAACCAGCAGCTTCCATTATGCCGACAACCAAATCAATTTGAACGGTCAGAAAATGTCCATTCAAAATTTCCTGGGCCTG
TTCGGCGTATTGGGTGCGCCGCCGGCCGTGCCGCAGCCCTGA

Upstream 100 bases:

>100_bases
GGCTTGGGCATTATTCCCTCGGTCATGTGCGCTTTTTGTTGCCTTAGGCGTTGCTGGTCGAACAAGTGGGATAGCAAGAA
ATTATAAGGATGCATAACCT

Downstream 100 bases:

>100_bases
TTTCCCCTGCCTGTCATCGCGCTCCCGGCCTCCAAGCCGGGGGCGCATTTTATAATTCGTCCGGACGTCGCCCCGGGCCG
GTCAATGTTATAATCATCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 493; Mature: 493

Protein sequence:

>493_residues
MKKNLLAVSVIVILGAAWTGGAWYTGKQFQRRLPELVNDVNARLQSTFPQSGLRFAAENYRRGVFTSHVDVVLQSDGTTG
DNKLLKPGEDVRFNEKVDHGPFPFAQLKKGVFIPSMASVHSVLAKTAKTQPLFDAAKANVPMVAETRVGYSGNTVSKITL
AAMDFQDNQTVIRAIGGTFDVAADGDKLKVTGGIDSLVLGGLNQWQQREQLTLHDFSVDNDTHNGKQGYSIGDNTLKART
LVYNLDSKDILSIDSLSQVTHAKEDGDKLSVQVNYALDALHIQGQNFGAGKLNISLSNLDGKAIEAFSDNYHQQVAQIMQ
QTGAVDPQQQQAQITQAFLQQLPTALKGSPYLTIAPLSWKNTKGESTFTLTLNLNDPATQNPALTPDQQWARFVNKLDSK
LTVPLDMATETTAQFARLQGYNEKDADQLAKQQVQGLAAMGQMFKLTTVADNTLTSSFHYADNQINLNGQKMSIQNFLGL
FGVLGAPPAVPQP

Sequences:

>Translated_493_residues
MKKNLLAVSVIVILGAAWTGGAWYTGKQFQRRLPELVNDVNARLQSTFPQSGLRFAAENYRRGVFTSHVDVVLQSDGTTG
DNKLLKPGEDVRFNEKVDHGPFPFAQLKKGVFIPSMASVHSVLAKTAKTQPLFDAAKANVPMVAETRVGYSGNTVSKITL
AAMDFQDNQTVIRAIGGTFDVAADGDKLKVTGGIDSLVLGGLNQWQQREQLTLHDFSVDNDTHNGKQGYSIGDNTLKART
LVYNLDSKDILSIDSLSQVTHAKEDGDKLSVQVNYALDALHIQGQNFGAGKLNISLSNLDGKAIEAFSDNYHQQVAQIMQ
QTGAVDPQQQQAQITQAFLQQLPTALKGSPYLTIAPLSWKNTKGESTFTLTLNLNDPATQNPALTPDQQWARFVNKLDSK
LTVPLDMATETTAQFARLQGYNEKDADQLAKQQVQGLAAMGQMFKLTTVADNTLTSSFHYADNQINLNGQKMSIQNFLGL
FGVLGAPPAVPQP
>Mature_493_residues
MKKNLLAVSVIVILGAAWTGGAWYTGKQFQRRLPELVNDVNARLQSTFPQSGLRFAAENYRRGVFTSHVDVVLQSDGTTG
DNKLLKPGEDVRFNEKVDHGPFPFAQLKKGVFIPSMASVHSVLAKTAKTQPLFDAAKANVPMVAETRVGYSGNTVSKITL
AAMDFQDNQTVIRAIGGTFDVAADGDKLKVTGGIDSLVLGGLNQWQQREQLTLHDFSVDNDTHNGKQGYSIGDNTLKART
LVYNLDSKDILSIDSLSQVTHAKEDGDKLSVQVNYALDALHIQGQNFGAGKLNISLSNLDGKAIEAFSDNYHQQVAQIMQ
QTGAVDPQQQQAQITQAFLQQLPTALKGSPYLTIAPLSWKNTKGESTFTLTLNLNDPATQNPALTPDQQWARFVNKLDSK
LTVPLDMATETTAQFARLQGYNEKDADQLAKQQVQGLAAMGQMFKLTTVADNTLTSSFHYADNQINLNGQKMSIQNFLGL
FGVLGAPPAVPQP

Specific function: Unknown

COG id: COG5339

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Periplasmic side. Note=Has been isolated in association with the inner membrane, suggesting it may be tethered to the membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yihF and H.influenzae HI_1236 [H]

Homologues:

Organism=Escherichia coli, GI1787900, Length=502, Percent_Identity=42.0318725099602, Blast_Score=403, Evalue=1e-113,
Organism=Escherichia coli, GI87082339, Length=488, Percent_Identity=27.2540983606557, Blast_Score=185, Evalue=7e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010352 [H]

Pfam domain/function: PF06097 DUF945 [H]

EC number: NA

Molecular weight: Translated: 53653; Mature: 53653

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNLLAVSVIVILGAAWTGGAWYTGKQFQRRLPELVNDVNARLQSTFPQSGLRFAAENY
CCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
RRGVFTSHVDVVLQSDGTTGDNKLLKPGEDVRFNEKVDHGPFPFAQLKKGVFIPSMASVH
CCCCEECEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHH
SVLAKTAKTQPLFDAAKANVPMVAETRVGYSGNTVSKITLAAMDFQDNQTVIRAIGGTFD
HHHHHHHCCCCCHHHHHCCCCEEEEECCCCCCCCEEEEEEEEECCCCCCCEEECCCCCEE
VAADGDKLKVTGGIDSLVLGGLNQWQQREQLTLHDFSVDNDTHNGKQGYSIGDNTLKART
EECCCCEEEEECCCHHHHHCCCHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEE
LVYNLDSKDILSIDSLSQVTHAKEDGDKLSVQVNYALDALHIQGQNFGAGKLNISLSNLD
EEEECCCCCEEEHHHHHHHHHCCCCCCEEEEEEEEEEEEEEEECCCCCCCEEEEEEECCC
GKAIEAFSDNYHQQVAQIMQQTGAVDPQQQQAQITQAFLQQLPTALKGSPYLTIAPLSWK
CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHCCCCEEEEEECCCC
NTKGESTFTLTLNLNDPATQNPALTPDQQWARFVNKLDSKLTVPLDMATETTAQFARLQG
CCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC
YNEKDADQLAKQQVQGLAAMGQMFKLTTVADNTLTSSFHYADNQINLNGQKMSIQNFLGL
CCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCEEECCCEEECCCCEEEHHHHHHH
FGVLGAPPAVPQP
HHHHCCCCCCCCC
>Mature Secondary Structure
MKKNLLAVSVIVILGAAWTGGAWYTGKQFQRRLPELVNDVNARLQSTFPQSGLRFAAENY
CCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
RRGVFTSHVDVVLQSDGTTGDNKLLKPGEDVRFNEKVDHGPFPFAQLKKGVFIPSMASVH
CCCCEECEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHH
SVLAKTAKTQPLFDAAKANVPMVAETRVGYSGNTVSKITLAAMDFQDNQTVIRAIGGTFD
HHHHHHHCCCCCHHHHHCCCCEEEEECCCCCCCCEEEEEEEEECCCCCCCEEECCCCCEE
VAADGDKLKVTGGIDSLVLGGLNQWQQREQLTLHDFSVDNDTHNGKQGYSIGDNTLKART
EECCCCEEEEECCCHHHHHCCCHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEE
LVYNLDSKDILSIDSLSQVTHAKEDGDKLSVQVNYALDALHIQGQNFGAGKLNISLSNLD
EEEECCCCCEEEHHHHHHHHHCCCCCCEEEEEEEEEEEEEEEECCCCCCCEEEEEEECCC
GKAIEAFSDNYHQQVAQIMQQTGAVDPQQQQAQITQAFLQQLPTALKGSPYLTIAPLSWK
CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHCCCCEEEEEECCCC
NTKGESTFTLTLNLNDPATQNPALTPDQQWARFVNKLDSKLTVPLDMATETTAQFARLQG
CCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC
YNEKDADQLAKQQVQGLAAMGQMFKLTTVADNTLTSSFHYADNQINLNGQKMSIQNFLGL
CCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCEEECCCEEECCCCEEEHHHHHHH
FGVLGAPPAVPQP
HHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]