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The map label for this gene is ydiK [H]

Identifier: 85059408

GI number: 85059408

Start: 2390704

End: 2391804

Strand: Reverse

Name: ydiK [H]

Synonym: SG1430

Alternate gene names: 85059408

Gene position: 2391804-2390704 (Counterclockwise)

Preceding gene: 85059415

Following gene: 85059406

Centisome position: 57.34

GC content: 57.4

Gene sequence:

>1101_bases
ATGGATTTCCCGCGCCAGCTTCACGATTTGCCCAGAATGTTATTCAGCGTGACGTTTATCGCGCTGATGACCCTTAGCTG
CTTTTGGGTAGTACAGCCCTTTATTCTCGGCTTTTCATGGGCATCAATGGTGGTGATAGCGACCTGGCCGCTGCTGATAA
AGGTGCAGCATTTGCTCTGGGGACGGCGTTCGCTGGCGGTGGTGGTCATGACGTTACTGCTGTTGCTGCTGTTTGTGCTG
CCGGTATCGATCCTGGTGAGCAGTATTGTCGATAATAGCGCCCCGCTGGTTGCCTGGGCTACACAGCCGGATCGGCTGAC
CTTGCCCGCCCTTGCCTGGCTGCAGGATATACCGATGGTGGGCCGCAAACTCTACAGCGCCTGGCAATCACTGATTTCCG
GCGGTAGCGCGCCGTTAATGAGCAAAATCCAGCCCTATATCGGCAAGGCCGCCAGCTGGCTGTTGGGCCAGGTGGCCAAC
CTGGGCAGCCTGCTGCTGCACTGCGGGTTGATGATTTTGTTCAGCGTCTTGCTGTATTTGCGCGGCGAACGCGTAGGGAT
GGCGGTGCGGCATTTCGCCATACGCCTGGGCGCAGAACGTGGCGACGCATCGGTTCTGCTGGCGGCGCAGGCCATCCGGG
CGGTCGCGATGGGCGTGGTGCTGACCGCTATTGTCCAGTCCGTGCTGGGCGGCGTCGGTCTGGCGATTACCGGCATTCCA
CTGGCGACCGTCCTGACCGTAACCATGTTCGTGTTGTGTATCGCCCAATTAGGCCCCTTGCCGGTGCTGATCCCGGCTAT
GATCTGGCTTTATTGGAGCGGCGATACCACCTGGGGAACGATATTACTAGTATGGAGCTGTGTCGTGGCGACCCTGGATA
ACATTCTGCGGCCGATATTCATCCATATGGGGGCCGATTTACCGATGCTTCTGGTGTTGTGCGGCGTATTGGGCGGTTTA
CTGGCTTTCGGAATGATAGGCCTCTTTATCGGACCAGTAGTGCTGGCGGTCTCCTGGCGGTTGGTATTCGCCTGGATGCA
GGAAGCGCCACCGCCGGGAAAAATCGATAATCCGGAAAAACAGCTTAAAGAATTACATTAA

Upstream 100 bases:

>100_bases
TCAAAAAATGACGATATACCCCATCATTATGCTACTCGCCCACATCGGCCATCGTCAGGTCGCGGGCAACCCGTCGTTTG
TTTGAGGAGAAAGGTGTTTC

Downstream 100 bases:

>100_bases
TCCCCTTAGGTCCCGGCGCTCGTCGGGACAATTATTTCCCCCCGTCGCAGCACCTATTCTCTTAAATCGCTAAGTCATTT
TGCCGTTATTTTACTTTAGC

Product: putative inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MDFPRQLHDLPRMLFSVTFIALMTLSCFWVVQPFILGFSWASMVVIATWPLLIKVQHLLWGRRSLAVVVMTLLLLLLFVL
PVSILVSSIVDNSAPLVAWATQPDRLTLPALAWLQDIPMVGRKLYSAWQSLISGGSAPLMSKIQPYIGKAASWLLGQVAN
LGSLLLHCGLMILFSVLLYLRGERVGMAVRHFAIRLGAERGDASVLLAAQAIRAVAMGVVLTAIVQSVLGGVGLAITGIP
LATVLTVTMFVLCIAQLGPLPVLIPAMIWLYWSGDTTWGTILLVWSCVVATLDNILRPIFIHMGADLPMLLVLCGVLGGL
LAFGMIGLFIGPVVLAVSWRLVFAWMQEAPPPGKIDNPEKQLKELH

Sequences:

>Translated_366_residues
MDFPRQLHDLPRMLFSVTFIALMTLSCFWVVQPFILGFSWASMVVIATWPLLIKVQHLLWGRRSLAVVVMTLLLLLLFVL
PVSILVSSIVDNSAPLVAWATQPDRLTLPALAWLQDIPMVGRKLYSAWQSLISGGSAPLMSKIQPYIGKAASWLLGQVAN
LGSLLLHCGLMILFSVLLYLRGERVGMAVRHFAIRLGAERGDASVLLAAQAIRAVAMGVVLTAIVQSVLGGVGLAITGIP
LATVLTVTMFVLCIAQLGPLPVLIPAMIWLYWSGDTTWGTILLVWSCVVATLDNILRPIFIHMGADLPMLLVLCGVLGGL
LAFGMIGLFIGPVVLAVSWRLVFAWMQEAPPPGKIDNPEKQLKELH
>Mature_366_residues
MDFPRQLHDLPRMLFSVTFIALMTLSCFWVVQPFILGFSWASMVVIATWPLLIKVQHLLWGRRSLAVVVMTLLLLLLFVL
PVSILVSSIVDNSAPLVAWATQPDRLTLPALAWLQDIPMVGRKLYSAWQSLISGGSAPLMSKIQPYIGKAASWLLGQVAN
LGSLLLHCGLMILFSVLLYLRGERVGMAVRHFAIRLGAERGDASVLLAAQAIRAVAMGVVLTAIVQSVLGGVGLAITGIP
LATVLTVTMFVLCIAQLGPLPVLIPAMIWLYWSGDTTWGTILLVWSCVVATLDNILRPIFIHMGADLPMLLVLCGVLGGL
LAFGMIGLFIGPVVLAVSWRLVFAWMQEAPPPGKIDNPEKQLKELH

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1787979, Length=354, Percent_Identity=61.5819209039548, Blast_Score=453, Evalue=1e-128,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 39809; Mature: 39809

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFPRQLHDLPRMLFSVTFIALMTLSCFWVVQPFILGFSWASMVVIATWPLLIKVQHLLW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRRSLAVVVMTLLLLLLFVLPVSILVSSIVDNSAPLVAWATQPDRLTLPALAWLQDIPMV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
GRKLYSAWQSLISGGSAPLMSKIQPYIGKAASWLLGQVANLGSLLLHCGLMILFSVLLYL
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGERVGMAVRHFAIRLGAERGDASVLLAAQAIRAVAMGVVLTAIVQSVLGGVGLAITGIP
CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LATVLTVTMFVLCIAQLGPLPVLIPAMIWLYWSGDTTWGTILLVWSCVVATLDNILRPIF
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IHMGADLPMLLVLCGVLGGLLAFGMIGLFIGPVVLAVSWRLVFAWMQEAPPPGKIDNPEK
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
QLKELH
HHHCCC
>Mature Secondary Structure
MDFPRQLHDLPRMLFSVTFIALMTLSCFWVVQPFILGFSWASMVVIATWPLLIKVQHLLW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRRSLAVVVMTLLLLLLFVLPVSILVSSIVDNSAPLVAWATQPDRLTLPALAWLQDIPMV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
GRKLYSAWQSLISGGSAPLMSKIQPYIGKAASWLLGQVANLGSLLLHCGLMILFSVLLYL
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGERVGMAVRHFAIRLGAERGDASVLLAAQAIRAVAMGVVLTAIVQSVLGGVGLAITGIP
CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LATVLTVTMFVLCIAQLGPLPVLIPAMIWLYWSGDTTWGTILLVWSCVVATLDNILRPIF
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IHMGADLPMLLVLCGVLGGLLAFGMIGLFIGPVVLAVSWRLVFAWMQEAPPPGKIDNPEK
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
QLKELH
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]