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The map label for this gene is yecD [H]

Identifier: 85059234

GI number: 85059234

Start: 2117159

End: 2117791

Strand: Reverse

Name: yecD [H]

Synonym: SG1256

Alternate gene names: 85059234

Gene position: 2117791-2117159 (Counterclockwise)

Preceding gene: 85059241

Following gene: 85059233

Centisome position: 50.77

GC content: 60.98

Gene sequence:

>633_bases
ATGTTAAAGCTCAATCCTTCTCGTAGCGCCTTGGTACTCATCGATTTGCAGAAAGGGATTTTGCCCTTCGCCGGCGGCCC
GCACAGCGCCGCGGACGTCGTCAAACGCGCCGCCGAACTCGCGCAGGGTTTTCGTGACGCCAACGCGCCGGTATTTCTGG
TGCGCGTGGGCTGGTCGGCCGATTTCGCTGACGCGCTGAAACAGCCGGTGGATAGCGCCAGCGGTGGTACCCTGCCGGCG
AACTGGTGGGACATTCCTGCCGATCTCCGGGCGCAGGATAGCGATATCCGAATCATTAAACGCCAGTGGGGCGCCTTTTA
CGGTACCGAGTTGGAAATGCAGTTGCGCCGGCGCGGAATTGAAACGATTGTGCTGGGGGGGGCATTTCAACCAATATCGG
CGTGGAATTCACCGCGCGTAATGCCTGGGAACTGGGCTTTGAGCTGGTGCTGGTGGAAGATATATGCAGCGCACACGATA
AAGCTCAGCACGACGGTAGTTTCCAGCATATCTTCCCGCGCCTTGGCCGGGTACGCCACAACGCTCAAGTGCTCGCCGCC
CTCACCGGGTAACCCCGGGTGGGCGATCAATCCGCTTGGGGCCGCCGCGTCGGTTACGCAGCGGCCCCGTTAA

Upstream 100 bases:

>100_bases
CGTGGCGATACTGTCACTTCAGGCTTGGAGTAACATACTCTGGGCTGACCGGCGCGGCCGACTAGCCGCTGCCGCGCATC
ATTCACTCACGGAGACCCGC

Downstream 100 bases:

>100_bases
CACGGAGACGCTATGCTTTATATCGGCCTACCACAGTGGCAGCACAGCGGCTGGGGCAAATATGGCCTGCGCACATTGGC
GGATTACGCCCGCCATTTTA

Product: putative isochorismatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MLKLNPSRSALVLIDLQKGILPFAGGPHSAADVVKRAAELAQGFRDANAPVFLVRVGWSADFADALKQPVDSASGGTLPA
NWWDIPADLRAQDSDIRIIKRQWGAFYGTELEMQLRRRGIETIVLGGAFQPISAWNSPRVMPGNWALSWCWWKIYAAHTI
KLSTTVVSSISSRALAGYATTLKCSPPSPGNPGWAINPLGAAASVTQRPR

Sequences:

>Translated_210_residues
MLKLNPSRSALVLIDLQKGILPFAGGPHSAADVVKRAAELAQGFRDANAPVFLVRVGWSADFADALKQPVDSASGGTLPA
NWWDIPADLRAQDSDIRIIKRQWGAFYGTELEMQLRRRGIETIVLGGAFQPISAWNSPRVMPGNWALSWCWWKIYAAHTI
KLSTTVVSSISSRALAGYATTLKCSPPSPGNPGWAINPLGAAASVTQRPR
>Mature_210_residues
MLKLNPSRSALVLIDLQKGILPFAGGPHSAADVVKRAAELAQGFRDANAPVFLVRVGWSADFADALKQPVDSASGGTLPA
NWWDIPADLRAQDSDIRIIKRQWGAFYGTELEMQLRRRGIETIVLGGAFQPISAWNSPRVMPGNWALSWCWWKIYAAHTI
KLSTTVVSSISSRALAGYATTLKCSPPSPGNPGWAINPLGAAASVTQRPR

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

Organism=Escherichia coli, GI87081992, Length=140, Percent_Identity=65.7142857142857, Blast_Score=182, Evalue=1e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 22703; Mature: 22703

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLNPSRSALVLIDLQKGILPFAGGPHSAADVVKRAAELAQGFRDANAPVFLVRVGWSA
CEEECCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
DFADALKQPVDSASGGTLPANWWDIPADLRAQDSDIRIIKRQWGAFYGTELEMQLRRRGI
CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHEECCCCCCCCHHHHHHHHCCC
ETIVLGGAFQPISAWNSPRVMPGNWALSWCWWKIYAAHTIKLSTTVVSSISSRALAGYAT
EEEEECCCCCCHHCCCCCCCCCCCEEHHEEEEEEEEHEEEEEHHHHHHHHHHHHHCCEEE
TLKCSPPSPGNPGWAINPLGAAASVTQRPR
EEEECCCCCCCCCEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MLKLNPSRSALVLIDLQKGILPFAGGPHSAADVVKRAAELAQGFRDANAPVFLVRVGWSA
CEEECCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
DFADALKQPVDSASGGTLPANWWDIPADLRAQDSDIRIIKRQWGAFYGTELEMQLRRRGI
CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHEECCCCCCCCHHHHHHHHCCC
ETIVLGGAFQPISAWNSPRVMPGNWALSWCWWKIYAAHTIKLSTTVVSSISSRALAGYAT
EEEEECCCCCCHHCCCCCCCCCCCEEHHEEEEEEEEHEEEEEHHHHHHHHHHHHHCCEEE
TLKCSPPSPGNPGWAINPLGAAASVTQRPR
EEEECCCCCCCCCEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]