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The map label for this gene is ymfK [C]

Identifier: 85059205

GI number: 85059205

Start: 2068572

End: 2069294

Strand: Reverse

Name: ymfK [C]

Synonym: SG1227

Alternate gene names: 85059205

Gene position: 2069294-2068572 (Counterclockwise)

Preceding gene: 85059213

Following gene: 85059204

Centisome position: 49.61

GC content: 41.22

Gene sequence:

>723_bases
ATGAAAACGAAGACACCTTTAACTCCAGAGCAACAAGCTGACGCAGCACGCCTGAAAGCCCTGTATGAGTTAAAAAAGAA
GGAATTGGGTCTTACCCAATACACAATAGCCGACCACCTTGGCATTTCTCAAGGTGCCGTAGGTCATTACCTTAATGGTA
GAAATCCGTTAAACGTACCGATAGCCTCTGAGTTCGCGTCGTTACTAAAAGTGTCAATCGGGGATTTTAGCCCTTCTCTT
GCGCAAACCATTTCACAATACTTAATTAATAATGCGAGCAATGCATGCAATATGTCTGCATTCAAAAAAGCGTACGATTA
TCCATTGTTCAGCACAATTCAAGCAGGCTTCTTTACAAATGAAGCAAAAGCATTCTCTTTATCAGATGCTAGAGACTGGG
TATCAACTACTCGAAAAGCAAGCGATAATGCTTTTTGGTTGGAAGTTGAAGGCCACTCTATGACCTCACCAGCAGGTTCA
CGACCAAGTTTTCCAGAAGGAATGCTAATACTCGTAGATCCTAAAGAATTGGTAGAGCCTGGTGATTTTTGTATAGCAAG
CATGGATGGTTGTGATTTCACCTTCAAACGTTACATCAAAGATGGAGGGATTCTTTATTTAGAGCCGTTAAATCCGCATT
TCCCGTTACTCACATGTAATGAAAGCTGTCAATTGGTTGGAAAAGTGATACATGCGCAATGGCCTGAAAAAACATTCGAT
TAA

Upstream 100 bases:

>100_bases
ATCTCCGTTTTATACACGACACAAAGAATACATCAGGTATTCCCTCATTACAATACCTCCCATATTTTGCCGTCAATACA
ATTGGTATTATCATGCAGTC

Downstream 100 bases:

>100_bases
ATCCCATAACATAAGCATGTTAGCCACAGCAAAGGGCATCGGCTAACGCTTTCTCTCACCCTTTTACTCCTAAACCCAGC
CCCCTCTCCCCCTCATTTCG

Product: phage repressor

Products: NA

Alternate protein names: ORF-96 protein [H]

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MKTKTPLTPEQQADAARLKALYELKKKELGLTQYTIADHLGISQGAVGHYLNGRNPLNVPIASEFASLLKVSIGDFSPSL
AQTISQYLINNASNACNMSAFKKAYDYPLFSTIQAGFFTNEAKAFSLSDARDWVSTTRKASDNAFWLEVEGHSMTSPAGS
RPSFPEGMLILVDPKELVEPGDFCIASMDGCDFTFKRYIKDGGILYLEPLNPHFPLLTCNESCQLVGKVIHAQWPEKTFD

Sequences:

>Translated_240_residues
MKTKTPLTPEQQADAARLKALYELKKKELGLTQYTIADHLGISQGAVGHYLNGRNPLNVPIASEFASLLKVSIGDFSPSL
AQTISQYLINNASNACNMSAFKKAYDYPLFSTIQAGFFTNEAKAFSLSDARDWVSTTRKASDNAFWLEVEGHSMTSPAGS
RPSFPEGMLILVDPKELVEPGDFCIASMDGCDFTFKRYIKDGGILYLEPLNPHFPLLTCNESCQLVGKVIHAQWPEKTFD
>Mature_240_residues
MKTKTPLTPEQQADAARLKALYELKKKELGLTQYTIADHLGISQGAVGHYLNGRNPLNVPIASEFASLLKVSIGDFSPSL
AQTISQYLINNASNACNMSAFKKAYDYPLFSTIQAGFFTNEAKAFSLSDARDWVSTTRKASDNAFWLEVEGHSMTSPAGS
RPSFPEGMLILVDPKELVEPGDFCIASMDGCDFTFKRYIKDGGILYLEPLNPHFPLLTCNESCQLVGKVIHAQWPEKTFD

Specific function: May control the expression of the integrase and inhibit excision of the mobile element R391, and regulate the expression of other genes as well [H]

COG id: COG1974

COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF01381 HTH_3; PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 26483; Mature: 26483

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTKTPLTPEQQADAARLKALYELKKKELGLTQYTIADHLGISQGAVGHYLNGRNPLNVP
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCCCCCCCHHHCCCCCCCCCC
IASEFASLLKVSIGDFSPSLAQTISQYLINNASNACNMSAFKKAYDYPLFSTIQAGFFTN
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCCC
EAKAFSLSDARDWVSTTRKASDNAFWLEVEGHSMTSPAGSRPSFPEGMLILVDPKELVEP
CCCEEECCHHHHHHHHHHCCCCCEEEEEECCCEECCCCCCCCCCCCCEEEEECCHHHHCC
GDFCIASMDGCDFTFKRYIKDGGILYLEPLNPHFPLLTCNESCQLVGKVIHAQWPEKTFD
CCEEEEECCCCCHHHHHHHCCCCEEEECCCCCCCCEEECCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKTKTPLTPEQQADAARLKALYELKKKELGLTQYTIADHLGISQGAVGHYLNGRNPLNVP
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCCCCCCCHHHCCCCCCCCCC
IASEFASLLKVSIGDFSPSLAQTISQYLINNASNACNMSAFKKAYDYPLFSTIQAGFFTN
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCCC
EAKAFSLSDARDWVSTTRKASDNAFWLEVEGHSMTSPAGSRPSFPEGMLILVDPKELVEP
CCCEEECCHHHHHHHHHHCCCCCEEEEEECCCEECCCCCCCCCCCCCEEEEECCHHHHCC
GDFCIASMDGCDFTFKRYIKDGGILYLEPLNPHFPLLTCNESCQLVGKVIHAQWPEKTFD
CCEEEEECCCCCHHHHHHHCCCCEEEECCCCCCCCEEECCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11157923; 12193633 [H]