Click here to switch to the map view.

The map label for this gene is ycbZ [H]

Identifier: 85059005

GI number: 85059005

Start: 1695513

End: 1697264

Strand: Reverse

Name: ycbZ [H]

Synonym: SG1027

Alternate gene names: 85059005

Gene position: 1697264-1695513 (Counterclockwise)

Preceding gene: 85059007

Following gene: 85059004

Centisome position: 40.69

GC content: 58.68

Gene sequence:

>1752_bases
TTGACCAACAAAAAATTAGAATGGAAATATTTACTGCCCGATCTGGCCGATTTCGCGGCGGTATTTGACCAACCCTGCCC
GCCTTTGTCCGCTCCTTTGGCAACTCTACAAGCCCGTCTTATGGATGGGTTGGCGCAATTTTGCCATTCACGCACGCCCT
GTCGCTTTATGCTGCTGACGGCACAAGAGGAGGAGGATTATTTTCAGCTGATTGCCGAGACGGTTAAACAGATCCTGCCT
GCACCAGCCCAGCCTGTCGGCAGCCGCTATGTCGTGACCGGCATGGGCGTTAGCGAACAGCCGGCGACCAAGCCGGAGGA
TAACTTCGCCGCCCACGATGTCTGCGTGTGGCAGTCCTGGTTGGAATACGAGCAGCTGTTCGGCGCGCTGCGCTGCTATC
GGGATGCCATCGATTTGCAGCCGGGCCTGGTACATCACGCCAACGGCGGCGTCCTCATCGTCGGGGCCCGCGCCCTCACC
AACCAGCCTCTGCTCTGGCTGCGGCTTAAGCAGATGATTTTGCGGCAACGCTTCGATTGGCTACCGGCAGACGATAGCCG
TCCTTTACCGGTTTCCGTCCCGTCGATGCCGCTCAACTTAAGGTTAATCGTTCTCGGCGACCGCGAGGGGTTGGCTGACC
TGAACGATCTGGAGCCTGAGCTGACCCGTCTGGCGCTCTATGGCGAATTCGAGTCCGAGCTGCGCATCACTGAGGCTGAG
GAAATGGCGCAATGGTGCGGTTGGGTCAACATGCTGGCCCAGCGCCAGGGGCTACCGGCGCTAAACGCGGACGCCTGGCC
GACCTTGATACGGCAATCAGTCCGCTATAGCGGTGATCAATGCCAGCTACCGCTGTGTCCCCAGTGGCTTACCCGGCGGC
TGAAAGAGGCGGCGCTGTACGGCTCCCAGCAGGCGCTGACCGCCGCGGCGTTTTCCGACAGTGAACGCACCCGCCTCTGG
CGTGAAAGCTATCTCAGTGAGCGGATGCAGGACGAAATCGCCGAAGGTCAGATTATGGTGGAAACGGAGGGTCAGGTCGT
AGGCCAGGTGAATGCGCTATCGGTGCTGGATTTCCCCGGTCATCCGCTGCCGTTCGGCGAACCCTCGCGCATTAGTTGCG
TCGTGCATTTGGGCGATGGTGAAATCAACGACGTCGAGCGCAAAGCGGAACTGGGCGGCAATATTCATGCTAAAGGCATG
ATGATTATGCAGGCGTTTTTGATGTCGGCGCTGGAGCTGGACCAACAGCTGCCCTTCTCCGCCTCGCTGGTTTTTGAGCA
GTCCTACGGTGAGGTGGACGGGGACAGCGCTTCACTGGCGGAAGGTGTCGCGCTTATCAGCGCGCTGGCGGATAAACCCA
TTAATCAACAAATCGCTGTTACCGGCTCGGTAGATCAGTTTGGCCGCGTCCAGCCCATCGGCGGCGTGAACGAGAAAATA
GAAAGCTTTTTCGCCCTGTGCCAGTCGCGCGAGCTGACCGGCGCCCAAGGGGTGATTCTTCCCACCGCCAATGTGCGCCA
CCTGTGCCTGCACGACGATGTTATCGTGGCGGTACGCGAGGGGCAATTTTCCCTGTGGGCGGTGGATACTATCGATGAAG
CGTTGGAAATCATGACCGCGTTGCCGTTTGACCACGACAAGCGTCCAAGTCTTCTCGCGTCGATACGCGAGCGTATCGCC
AATGTTAATCTGCACGAACGGCAACGTTTGCCCTGGTGCTTTCGCTGGCTAAACTGGTTTAACCAGAGCTAA

Upstream 100 bases:

>100_bases
TTGCGGCAATGATGCCTCTGGAAAGAAAAGAGGCCGAGACGAAGCAATGTCTCTTCTTGTATAATAAGCGTTTCCCTGAA
CAGCGACGCTATTTATCATT

Downstream 100 bases:

>100_bases
GGGAATTGTCAGCGGCCAGCATGTCGGGTAATGTGCGGGACTCAATAATTAAGGTTTAGAGAAATATGGTAGATAAACGC
GAATCCTATACAAAAGAAGA

Product: putative ATP-dependent protease

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 583; Mature: 582

Protein sequence:

>583_residues
MTNKKLEWKYLLPDLADFAAVFDQPCPPLSAPLATLQARLMDGLAQFCHSRTPCRFMLLTAQEEEDYFQLIAETVKQILP
APAQPVGSRYVVTGMGVSEQPATKPEDNFAAHDVCVWQSWLEYEQLFGALRCYRDAIDLQPGLVHHANGGVLIVGARALT
NQPLLWLRLKQMILRQRFDWLPADDSRPLPVSVPSMPLNLRLIVLGDREGLADLNDLEPELTRLALYGEFESELRITEAE
EMAQWCGWVNMLAQRQGLPALNADAWPTLIRQSVRYSGDQCQLPLCPQWLTRRLKEAALYGSQQALTAAAFSDSERTRLW
RESYLSERMQDEIAEGQIMVETEGQVVGQVNALSVLDFPGHPLPFGEPSRISCVVHLGDGEINDVERKAELGGNIHAKGM
MIMQAFLMSALELDQQLPFSASLVFEQSYGEVDGDSASLAEGVALISALADKPINQQIAVTGSVDQFGRVQPIGGVNEKI
ESFFALCQSRELTGAQGVILPTANVRHLCLHDDVIVAVREGQFSLWAVDTIDEALEIMTALPFDHDKRPSLLASIRERIA
NVNLHERQRLPWCFRWLNWFNQS

Sequences:

>Translated_583_residues
MTNKKLEWKYLLPDLADFAAVFDQPCPPLSAPLATLQARLMDGLAQFCHSRTPCRFMLLTAQEEEDYFQLIAETVKQILP
APAQPVGSRYVVTGMGVSEQPATKPEDNFAAHDVCVWQSWLEYEQLFGALRCYRDAIDLQPGLVHHANGGVLIVGARALT
NQPLLWLRLKQMILRQRFDWLPADDSRPLPVSVPSMPLNLRLIVLGDREGLADLNDLEPELTRLALYGEFESELRITEAE
EMAQWCGWVNMLAQRQGLPALNADAWPTLIRQSVRYSGDQCQLPLCPQWLTRRLKEAALYGSQQALTAAAFSDSERTRLW
RESYLSERMQDEIAEGQIMVETEGQVVGQVNALSVLDFPGHPLPFGEPSRISCVVHLGDGEINDVERKAELGGNIHAKGM
MIMQAFLMSALELDQQLPFSASLVFEQSYGEVDGDSASLAEGVALISALADKPINQQIAVTGSVDQFGRVQPIGGVNEKI
ESFFALCQSRELTGAQGVILPTANVRHLCLHDDVIVAVREGQFSLWAVDTIDEALEIMTALPFDHDKRPSLLASIRERIA
NVNLHERQRLPWCFRWLNWFNQS
>Mature_582_residues
TNKKLEWKYLLPDLADFAAVFDQPCPPLSAPLATLQARLMDGLAQFCHSRTPCRFMLLTAQEEEDYFQLIAETVKQILPA
PAQPVGSRYVVTGMGVSEQPATKPEDNFAAHDVCVWQSWLEYEQLFGALRCYRDAIDLQPGLVHHANGGVLIVGARALTN
QPLLWLRLKQMILRQRFDWLPADDSRPLPVSVPSMPLNLRLIVLGDREGLADLNDLEPELTRLALYGEFESELRITEAEE
MAQWCGWVNMLAQRQGLPALNADAWPTLIRQSVRYSGDQCQLPLCPQWLTRRLKEAALYGSQQALTAAAFSDSERTRLWR
ESYLSERMQDEIAEGQIMVETEGQVVGQVNALSVLDFPGHPLPFGEPSRISCVVHLGDGEINDVERKAELGGNIHAKGMM
IMQAFLMSALELDQQLPFSASLVFEQSYGEVDGDSASLAEGVALISALADKPINQQIAVTGSVDQFGRVQPIGGVNEKIE
SFFALCQSRELTGAQGVILPTANVRHLCLHDDVIVAVREGQFSLWAVDTIDEALEIMTALPFDHDKRPSLLASIRERIAN
VNLHERQRLPWCFRWLNWFNQS

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=586, Percent_Identity=55.80204778157, Blast_Score=669, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.-

Molecular weight: Translated: 65198; Mature: 65067

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNKKLEWKYLLPDLADFAAVFDQPCPPLSAPLATLQARLMDGLAQFCHSRTPCRFMLLT
CCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
AQEEEDYFQLIAETVKQILPAPAQPVGSRYVVTGMGVSEQPATKPEDNFAAHDVCVWQSW
CCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
LEYEQLFGALRCYRDAIDLQPGLVHHANGGVLIVGARALTNQPLLWLRLKQMILRQRFDW
HHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECHHHCCCCHHHHHHHHHHHHHHCCC
LPADDSRPLPVSVPSMPLNLRLIVLGDREGLADLNDLEPELTRLALYGEFESELRITEAE
CCCCCCCCCEEECCCCCCEEEEEEEECCCCCCCCHHCCHHHHHEEEEECCCCCEEECCHH
EMAQWCGWVNMLAQRQGLPALNADAWPTLIRQSVRYSGDQCQLPLCPQWLTRRLKEAALY
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC
GSQQALTAAAFSDSERTRLWRESYLSERMQDEIAEGQIMVETEGQVVGQVNALSVLDFPG
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEECCCEEEEECCCC
HPLPFGEPSRISCVVHLGDGEINDVERKAELGGNIHAKGMMIMQAFLMSALELDQQLPFS
CCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCCC
ASLVFEQSYGEVDGDSASLAEGVALISALADKPINQQIAVTGSVDQFGRVQPIGGVNEKI
EEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCCCHHHHH
ESFFALCQSRELTGAQGVILPTANVRHLCLHDDVIVAVREGQFSLWAVDTIDEALEIMTA
HHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCEEEEEECCCEEEEEHHHHHHHHHHHHH
LPFDHDKRPSLLASIRERIANVNLHERQRLPWCFRWLNWFNQS
CCCCCCCCHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TNKKLEWKYLLPDLADFAAVFDQPCPPLSAPLATLQARLMDGLAQFCHSRTPCRFMLLT
CCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
AQEEEDYFQLIAETVKQILPAPAQPVGSRYVVTGMGVSEQPATKPEDNFAAHDVCVWQSW
CCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
LEYEQLFGALRCYRDAIDLQPGLVHHANGGVLIVGARALTNQPLLWLRLKQMILRQRFDW
HHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECHHHCCCCHHHHHHHHHHHHHHCCC
LPADDSRPLPVSVPSMPLNLRLIVLGDREGLADLNDLEPELTRLALYGEFESELRITEAE
CCCCCCCCCEEECCCCCCEEEEEEEECCCCCCCCHHCCHHHHHEEEEECCCCCEEECCHH
EMAQWCGWVNMLAQRQGLPALNADAWPTLIRQSVRYSGDQCQLPLCPQWLTRRLKEAALY
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC
GSQQALTAAAFSDSERTRLWRESYLSERMQDEIAEGQIMVETEGQVVGQVNALSVLDFPG
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEECCCEEEEECCCC
HPLPFGEPSRISCVVHLGDGEINDVERKAELGGNIHAKGMMIMQAFLMSALELDQQLPFS
CCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCCC
ASLVFEQSYGEVDGDSASLAEGVALISALADKPINQQIAVTGSVDQFGRVQPIGGVNEKI
EEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCCCHHHHH
ESFFALCQSRELTGAQGVILPTANVRHLCLHDDVIVAVREGQFSLWAVDTIDEALEIMTA
HHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCEEEEEECCCEEEEEHHHHHHHHHHHHH
LPFDHDKRPSLLASIRERIANVNLHERQRLPWCFRWLNWFNQS
CCCCCCCCHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]