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The map label for this gene is xseB

Identifier: 85058636

GI number: 85058636

Start: 1120757

End: 1121005

Strand: Reverse

Name: xseB

Synonym: SG0658

Alternate gene names: 85058636

Gene position: 1121005-1120757 (Counterclockwise)

Preceding gene: 85058638

Following gene: 85058635

Centisome position: 26.88

GC content: 55.02

Gene sequence:

>249_bases
ATGCCAAAAAAAGCAGAAAAACCCGCCAGTTTTGAGACTGCGCTTAAAGAACTGGAGCAGATAGTCACCCGCCTGGAATC
CGGTGAACTGCCGCTGGAGCAGGCACTTAATGAATTCGAGCAGGGCGTGCAGCTGGCGCGACAAGGTCAGAAAACCCTGC
AACAGGCAGAACAGCGGGTGCAGATTCTGCTAAACGATACGCCAGACGCCCCGCTCGCTCCCTTTGCGCCGGAAAATGAT
GCGCTATGA

Upstream 100 bases:

>100_bases
CTTTATGCCGCGGGATTAAGGCGCAATTTGCTTATCACCGCACTCTGGGCTAACGTGGGCCGCCACTCGCGCCTTCGCTA
TCTACCGGTAGGATACAGAC

Downstream 100 bases:

>100_bases
CTGATTTCGCGCGCGCGCTTGAAAATAGCCGCCAGCAAGTGGACGCGGCGCTGGAACGTTATCTCAGCGTCCTCGCCAAT
CCGCAGGCTCCCCTTATCCA

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 82; Mature: 81

Protein sequence:

>82_residues
MPKKAEKPASFETALKELEQIVTRLESGELPLEQALNEFEQGVQLARQGQKTLQQAEQRVQILLNDTPDAPLAPFAPEND
AL

Sequences:

>Translated_82_residues
MPKKAEKPASFETALKELEQIVTRLESGELPLEQALNEFEQGVQLARQGQKTLQQAEQRVQILLNDTPDAPLAPFAPEND
AL
>Mature_81_residues
PKKAEKPASFETALKELEQIVTRLESGELPLEQALNEFEQGVQLARQGQKTLQQAEQRVQILLNDTPDAPLAPFAPENDA
L

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

Organism=Escherichia coli, GI1786624, Length=80, Percent_Identity=78.75, Blast_Score=124, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_SODGM (Q2NV92)

Other databases:

- EMBL:   AP008232
- RefSeq:   YP_454338.1
- ProteinModelPortal:   Q2NV92
- SMR:   Q2NV92
- STRING:   Q2NV92
- GeneID:   3868004
- GenomeReviews:   AP008232_GR
- KEGG:   sgl:SG0658
- NMPDR:   fig|343509.6.peg.1450
- eggNOG:   COG1722
- HOGENOM:   HBG728416
- OMA:   APLNDYK
- PhylomeDB:   Q2NV92
- ProtClustDB:   PRK00977
- BioCyc:   SGLO343509:SG0658-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 9111; Mature: 8980

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKKAEKPASFETALKELEQIVTRLESGELPLEQALNEFEQGVQLARQGQKTLQQAEQRV
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QILLNDTPDAPLAPFAPENDAL
HHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PKKAEKPASFETALKELEQIVTRLESGELPLEQALNEFEQGVQLARQGQKTLQQAEQRV
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QILLNDTPDAPLAPFAPENDAL
HHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA