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The map label for this gene is yqhC [H]

Identifier: 85058584

GI number: 85058584

Start: 1030454

End: 1031161

Strand: Reverse

Name: yqhC [H]

Synonym: SG0606

Alternate gene names: 85058584

Gene position: 1031161-1030454 (Counterclockwise)

Preceding gene: 85058585

Following gene: 85058575

Centisome position: 24.72

GC content: 58.19

Gene sequence:

>708_bases
ATGAGTTTTCATCAGGATGTAGGAAAAATGCGCGACGCTATTGCCTCGATACCGCGTCAAATGGCGCTGCTGCTGGACAC
GCTTGCCCGCGCCGAGGGTTACACACGCTCATTGCTTGAGGGTATACAGTTTATGCGGGCCGAACACCCACTCGAACGTA
CCCCGGTGCTGTATGATCCCTGCATCGTCATCGTATGTCAGGGCCGTAAGCGAGGGTATTTGGCGGAAAAGGGGTATTGC
TATGATCAGCACCACTATCTGGTTCTGTCCGTACCCTTACAGTTTCTCACGGAAACGGAAGCCAGCCCGCAATATCCCCT
TCTGGCCGTGGCGATAGCCCTGAATATGGCGGTGCTGTCGGAGCTGGTCATGTGGCTTGACAGGCCCGGAACGCGGGCCT
GCGACGCGCCGGAAGGCATTATCTACACGCCGCTGGATGCGGCAATAGCCGATACCACATTACGCCTGTTGCAGGCGCTG
GCCTCAAAGGAAGAAGCACGCATCCTCGGCCCGCAGGTGGTGCGCGAGCTTTATTATCGAGTGCTGGTGGGGGAACGGGG
CAATGCGCTTAGGGCGGCGTTGGCGAATCAAGGGCATTTCGCCCATATCTCCCGTTCGCTGGAGCGCATTCATCGCGGAC
TACCCCCGCGCTGTGTCCATCGCCACGCTGGCAGAAGATGCCGGGATGAGTGTTCCTGCTTTCCATAA

Upstream 100 bases:

>100_bases
TTTAAGCGTAGGCAGGCACAGCGTTGACGAAAAGGCGTATTCCTCTTCATTGATTGCCTGATACTATTCAAACCAGAAAT
AGAGCGATTATCAGGCGAAA

Downstream 100 bases:

>100_bases
ACGCTTTAAAGCCGTCACCGGCACCTCGCCGCTACAGTACATTAAATCCTTACGCCTGAATCAGGTGCGATTGTTGATGA
TACGCAACTCTCTCAGTGCC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MSFHQDVGKMRDAIASIPRQMALLLDTLARAEGYTRSLLEGIQFMRAEHPLERTPVLYDPCIVIVCQGRKRGYLAEKGYC
YDQHHYLVLSVPLQFLTETEASPQYPLLAVAIALNMAVLSELVMWLDRPGTRACDAPEGIIYTPLDAAIADTTLRLLQAL
ASKEEARILGPQVVRELYYRVLVGERGNALRAALANQGHFAHISRSLERIHRGLPPRCVHRHAGRRCRDECSCFP

Sequences:

>Translated_235_residues
MSFHQDVGKMRDAIASIPRQMALLLDTLARAEGYTRSLLEGIQFMRAEHPLERTPVLYDPCIVIVCQGRKRGYLAEKGYC
YDQHHYLVLSVPLQFLTETEASPQYPLLAVAIALNMAVLSELVMWLDRPGTRACDAPEGIIYTPLDAAIADTTLRLLQAL
ASKEEARILGPQVVRELYYRVLVGERGNALRAALANQGHFAHISRSLERIHRGLPPRCVHRHAGRRCRDECSCFP
>Mature_234_residues
SFHQDVGKMRDAIASIPRQMALLLDTLARAEGYTRSLLEGIQFMRAEHPLERTPVLYDPCIVIVCQGRKRGYLAEKGYCY
DQHHYLVLSVPLQFLTETEASPQYPLLAVAIALNMAVLSELVMWLDRPGTRACDAPEGIIYTPLDAAIADTTLRLLQALA
SKEEARILGPQVVRELYYRVLVGERGNALRAALANQGHFAHISRSLERIHRGLPPRCVHRHAGRRCRDECSCFP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=206, Percent_Identity=36.8932038834951, Blast_Score=120, Evalue=1e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 26432; Mature: 26301

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFHQDVGKMRDAIASIPRQMALLLDTLARAEGYTRSLLEGIQFMRAEHPLERTPVLYDP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCEECC
CIVIVCQGRKRGYLAEKGYCYDQHHYLVLSVPLQFLTETEASPQYPLLAVAIALNMAVLS
EEEEEECCCCCCCCCCCCEEECCCCEEEEECCHHHHHHCCCCCCCHHHHHHHHHHHHHHH
ELVMWLDRPGTRACDAPEGIIYTPLDAAIADTTLRLLQALASKEEARILGPQVVRELYYR
HHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHH
VLVGERGNALRAALANQGHFAHISRSLERIHRGLPPRCVHRHAGRRCRDECSCFP
HHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHCCCCC
>Mature Secondary Structure 
SFHQDVGKMRDAIASIPRQMALLLDTLARAEGYTRSLLEGIQFMRAEHPLERTPVLYDP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCEECC
CIVIVCQGRKRGYLAEKGYCYDQHHYLVLSVPLQFLTETEASPQYPLLAVAIALNMAVLS
EEEEEECCCCCCCCCCCCEEECCCCEEEEECCHHHHHHCCCCCCCHHHHHHHHHHHHHHH
ELVMWLDRPGTRACDAPEGIIYTPLDAAIADTTLRLLQALASKEEARILGPQVVRELYYR
HHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHH
VLVGERGNALRAALANQGHFAHISRSLERIHRGLPPRCVHRHAGRRCRDECSCFP
HHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]