Click here to switch to the map view.

The map label for this gene is psd

Identifier: 85058290

GI number: 85058290

Start: 561686

End: 562573

Strand: Reverse

Name: psd

Synonym: SG0312

Alternate gene names: 85058290

Gene position: 562573-561686 (Counterclockwise)

Preceding gene: 85058291

Following gene: 85058289

Centisome position: 13.49

GC content: 60.47

Gene sequence:

>888_bases
GTGCTGGACAGGATAAAGATAGCTTTACAACACCTACTGCCTAAGCGCTGGCTGACGGAGCTGGCCGGTTGGGGCGCTGA
ACGCCGGGGCGGCTGGCTAACCCGCGGGGTCATTACTCTGTTTGTGCGCTGGTATAAAGTCGACATGCAGGAAGCACAGC
AGCCGGATGTGGCCACCTATCCCACCTTTAACGCATTTTTTGTCCGGCCGCTGCGCGATGAAGCCCGGCCCATTGATGCC
GACCCCGCCGTGCTGGTGTTGCCGGCGGACGGGATCATTTCCCAGCTCGGCCCCATTGAGGGCGAGCAGGTGTTCCAGGC
GAAGGGGCATCACTACAGCTTGGAAGCGCTGCTGGCCGGCAATGAGTCCATGATCACACGGTTTCGCGACGGCAGTTTCG
CCACCACCTATCTCGCCCCGCGCGATTATCATCGCGTGCATATGCCCTGCAACGGCGTGTTACGCGAAATGTTGTACGTG
CCGGGGGAATTGTTTTCGGTGAACCCGTTGACGGCGGCGAATATTCCCAATCTGTTCGCCCGCAACGAGCGGATTATCTG
CCTGTTTGATACCGATTTCGGTCCGATGGCGCAGATCCTGGTCGGTGCAACCATTGTCGGCAGCATTGAAACCGTGTGGG
CGGGGACCGTTACGCCGCCGCGGGAGGGGATTATCAAGCGCTGGCGCTACCCTCAGGCGGACGCCGACGGGGCGGTGGTA
CTGCTGAAAGGCCAGGAGATGGGGCGCTTTAAGCTGGGTTCTACCGTCATCAATCTGTTTGCCGGCAAAAATGTTCTGCT
GGGCGAACATCTGTATACCCGCTACGTCACCCGCGTCGGTCAGCGACTGGCCCACGGCATCGCGCAAACCGACAGCCCGC
TGACCTGA

Upstream 100 bases:

>100_bases
GCCCGTAAGTCGTTTTGATGGCCCGATCGCTGACTTTTAACGCCGCCGCCGGTACAATGCGGTCCCTTTTGGCTAAACAC
ATAACAGGAACGAGGTCCCC

Downstream 100 bases:

>100_bases
TTCACCTACGGTTAACTTGAGAGTTTTCACCTTGCGCCTGATTACGATTTTCCTTCTGGGGTGGCTACTGGCCTCCCCGG
CCTTCGCCGCCAATCTGCCT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MLDRIKIALQHLLPKRWLTELAGWGAERRGGWLTRGVITLFVRWYKVDMQEAQQPDVATYPTFNAFFVRPLRDEARPIDA
DPAVLVLPADGIISQLGPIEGEQVFQAKGHHYSLEALLAGNESMITRFRDGSFATTYLAPRDYHRVHMPCNGVLREMLYV
PGELFSVNPLTAANIPNLFARNERIICLFDTDFGPMAQILVGATIVGSIETVWAGTVTPPREGIIKRWRYPQADADGAVV
LLKGQEMGRFKLGSTVINLFAGKNVLLGEHLYTRYVTRVGQRLAHGIAQTDSPLT

Sequences:

>Translated_295_residues
MLDRIKIALQHLLPKRWLTELAGWGAERRGGWLTRGVITLFVRWYKVDMQEAQQPDVATYPTFNAFFVRPLRDEARPIDA
DPAVLVLPADGIISQLGPIEGEQVFQAKGHHYSLEALLAGNESMITRFRDGSFATTYLAPRDYHRVHMPCNGVLREMLYV
PGELFSVNPLTAANIPNLFARNERIICLFDTDFGPMAQILVGATIVGSIETVWAGTVTPPREGIIKRWRYPQADADGAVV
LLKGQEMGRFKLGSTVINLFAGKNVLLGEHLYTRYVTRVGQRLAHGIAQTDSPLT
>Mature_295_residues
MLDRIKIALQHLLPKRWLTELAGWGAERRGGWLTRGVITLFVRWYKVDMQEAQQPDVATYPTFNAFFVRPLRDEARPIDA
DPAVLVLPADGIISQLGPIEGEQVFQAKGHHYSLEALLAGNESMITRFRDGSFATTYLAPRDYHRVHMPCNGVLREMLYV
PGELFSVNPLTAANIPNLFARNERIICLFDTDFGPMAQILVGATIVGSIETVWAGTVTPPREGIIKRWRYPQADADGAVV
LLKGQEMGRFKLGSTVINLFAGKNVLLGEHLYTRYVTRVGQRLAHGIAQTDSPLT

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily

Homologues:

Organism=Homo sapiens, GI13489112, Length=281, Percent_Identity=32.0284697508897, Blast_Score=120, Evalue=2e-27,
Organism=Escherichia coli, GI1790604, Length=284, Percent_Identity=73.943661971831, Blast_Score=449, Evalue=1e-127,
Organism=Caenorhabditis elegans, GI71980843, Length=231, Percent_Identity=32.9004329004329, Blast_Score=126, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI71980840, Length=231, Percent_Identity=32.9004329004329, Blast_Score=125, Evalue=2e-29,
Organism=Saccharomyces cerevisiae, GI6321609, Length=247, Percent_Identity=29.5546558704453, Blast_Score=104, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6324160, Length=162, Percent_Identity=36.4197530864198, Blast_Score=86, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24649526, Length=310, Percent_Identity=30.3225806451613, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24649528, Length=310, Percent_Identity=30.3225806451613, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24649524, Length=310, Percent_Identity=30.3225806451613, Blast_Score=109, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_SODGM (Q2NW88)

Other databases:

- EMBL:   AP008232
- RefSeq:   YP_453992.1
- STRING:   Q2NW88
- GeneID:   3868580
- GenomeReviews:   AP008232_GR
- KEGG:   sgl:SG0312
- NMPDR:   fig|343509.6.peg.727
- eggNOG:   COG0688
- HOGENOM:   HBG302256
- OMA:   MATVWHG
- PhylomeDB:   Q2NW88
- ProtClustDB:   PRK00044
- BioCyc:   SGLO343509:SG0312-MONOMER
- HAMAP:   MF_00662
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 32940; Mature: 32940

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDRIKIALQHLLPKRWLTELAGWGAERRGGWLTRGVITLFVRWYKVDMQEAQQPDVATY
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PTFNAFFVRPLRDEARPIDADPAVLVLPADGIISQLGPIEGEQVFQAKGHHYSLEALLAG
CCCCCEEEEECCCCCCCCCCCCEEEEEECCHHHHHHCCCCCHHHHHHCCCEEEEEEEEEC
NESMITRFRDGSFATTYLAPRDYHRVHMPCNGVLREMLYVPGELFSVNPLTAANIPNLFA
CHHHEEEECCCCEEEEEECCCCCCEEECCHHHHHHHHHHCCCCEEECCCCCCCCCCHHHH
RNERIICLFDTDFGPMAQILVGATIVGSIETVWAGTVTPPREGIIKRWRYPQADADGAVV
CCCEEEEEEECCCCHHHHHHHHHHHHCCHHHEEECCCCCCHHHHHHHCCCCCCCCCCEEE
LLKGQEMGRFKLGSTVINLFAGKNVLLGEHLYTRYVTRVGQRLAHGIAQTDSPLT
EEECCCCCCEEHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLDRIKIALQHLLPKRWLTELAGWGAERRGGWLTRGVITLFVRWYKVDMQEAQQPDVATY
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PTFNAFFVRPLRDEARPIDADPAVLVLPADGIISQLGPIEGEQVFQAKGHHYSLEALLAG
CCCCCEEEEECCCCCCCCCCCCEEEEEECCHHHHHHCCCCCHHHHHHCCCEEEEEEEEEC
NESMITRFRDGSFATTYLAPRDYHRVHMPCNGVLREMLYVPGELFSVNPLTAANIPNLFA
CHHHEEEECCCCEEEEEECCCCCCEEECCHHHHHHHHHHCCCCEEECCCCCCCCCCHHHH
RNERIICLFDTDFGPMAQILVGATIVGSIETVWAGTVTPPREGIIKRWRYPQADADGAVV
CCCEEEEEEECCCCHHHHHHHHHHHHCCHHHEEECCCCCCHHHHHHHCCCCCCCCCCEEE
LLKGQEMGRFKLGSTVINLFAGKNVLLGEHLYTRYVTRVGQRLAHGIAQTDSPLT
EEECCCCCCEEHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA