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The map label for this gene is lptC [H]

Identifier: 85058180

GI number: 85058180

Start: 381392

End: 381970

Strand: Reverse

Name: lptC [H]

Synonym: SG0202

Alternate gene names: 85058180

Gene position: 381970-381392 (Counterclockwise)

Preceding gene: 85058181

Following gene: 85058179

Centisome position: 9.16

GC content: 54.75

Gene sequence:

>579_bases
ATGAGCAAGACAACGCGTTGGACCACGGCGCTGCTGGGATTATTGGTATTAGTGCTTATCGGCTGGAATTTGGCGGACAC
CGACACGGCGCCGGCCCAGACGCCGGTGAACGCCGGCGAGCCCACCTATCAAAGTGAATATACCACAACCGTGGTGTATA
ACCCGGCAGGGGGGCTCAATTACAAGCTGGTGGCCGATCATGTGGATCATTTCGCCGATCAACATATCACCTGGTTCACC
CGGCCGGTCGCCACCACGTTCGATGAGAGCAAAGTGCCGACCTGGACGGTGAAGGCCGATAAGGCCAAGCTGACCCAGGA
CAGGATGCTTTACCTGTATGGCCACGTTCAGGTGGACAGCCTAACCGATGCCTCGCAGCTTAAACGCATAACAACAGATA
ACGCGGTGGTTAACCTGGTCACGCAGGACGTCTCCTCGGATGATGAGGTAACCTTATATGGTACCGGCTTTAACTCCACC
GGCATGAAGATGCGCGGCAATCTGCGCAACAAGACCGCCGAGTTGATTGAAAAGGTTAAGACCTCTTATGAAATCCAGAA
TTCACAACGTACGCCCTAG

Upstream 100 bases:

>100_bases
ATGTTACCCGCATCGCCGGCGGCCGCGGCGCGGTGCGGGAAGTCTGCGACCTGCTGCTGCTGGCGCAGGGAAAGCTGGAG
GATGCCAAAGGGCAGTCGTT

Downstream 100 bases:

>100_bases
CCTGCTTCTGGCCGGCGGCTTAATGCTGGCCAGCGCGCAGGCGCTGGCGCTGGCCAGCGACAATCAGCAGCCGATTCATA
TCGACTCCGCGCAGCAGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSKTTRWTTALLGLLVLVLIGWNLADTDTAPAQTPVNAGEPTYQSEYTTTVVYNPAGGLNYKLVADHVDHFADQHITWFT
RPVATTFDESKVPTWTVKADKAKLTQDRMLYLYGHVQVDSLTDASQLKRITTDNAVVNLVTQDVSSDDEVTLYGTGFNST
GMKMRGNLRNKTAELIEKVKTSYEIQNSQRTP

Sequences:

>Translated_192_residues
MSKTTRWTTALLGLLVLVLIGWNLADTDTAPAQTPVNAGEPTYQSEYTTTVVYNPAGGLNYKLVADHVDHFADQHITWFT
RPVATTFDESKVPTWTVKADKAKLTQDRMLYLYGHVQVDSLTDASQLKRITTDNAVVNLVTQDVSSDDEVTLYGTGFNST
GMKMRGNLRNKTAELIEKVKTSYEIQNSQRTP
>Mature_191_residues
SKTTRWTTALLGLLVLVLIGWNLADTDTAPAQTPVNAGEPTYQSEYTTTVVYNPAGGLNYKLVADHVDHFADQHITWFTR
PVATTFDESKVPTWTVKADKAKLTQDRMLYLYGHVQVDSLTDASQLKRITTDNAVVNLVTQDVSSDDEVTLYGTGFNSTG
MKMRGNLRNKTAELIEKVKTSYEIQNSQRTP

Specific function: Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG3117

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptC family [H]

Homologues:

Organism=Escherichia coli, GI1789591, Length=192, Percent_Identity=65.625, Blast_Score=268, Evalue=1e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010664 [H]

Pfam domain/function: PF06835 DUF1239 [H]

EC number: NA

Molecular weight: Translated: 21377; Mature: 21246

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTTRWTTALLGLLVLVLIGWNLADTDTAPAQTPVNAGEPTYQSEYTTTVVYNPAGGLN
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCE
YKLVADHVDHFADQHITWFTRPVATTFDESKVPTWTVKADKAKLTQDRMLYLYGHVQVDS
EEEHHHHHHHHHCCCEEEEECCHHCCCCCCCCCEEEEECCCHHCCCCEEEEEEEEEEECC
LTDASQLKRITTDNAVVNLVTQDVSSDDEVTLYGTGFNSTGMKMRGNLRNKTAELIEKVK
CCCHHHHHHHCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCEEECCCCHHHHHHHHHHH
TSYEIQNSQRTP
HHHEECCCCCCC
>Mature Secondary Structure 
SKTTRWTTALLGLLVLVLIGWNLADTDTAPAQTPVNAGEPTYQSEYTTTVVYNPAGGLN
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCE
YKLVADHVDHFADQHITWFTRPVATTFDESKVPTWTVKADKAKLTQDRMLYLYGHVQVDS
EEEHHHHHHHHHCCCEEEEECCHHCCCCCCCCCEEEEECCCHHCCCCEEEEEEEEEEECC
LTDASQLKRITTDNAVVNLVTQDVSSDDEVTLYGTGFNSTGMKMRGNLRNKTAELIEKVK
CCCHHHHHHHCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCEEECCCCHHHHHHHHHHH
TSYEIQNSQRTP
HHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]