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The map label for this gene is fliD [H]

Identifier: 85058035

GI number: 85058035

Start: 72688

End: 74148

Strand: Reverse

Name: fliD [H]

Synonym: SG0057

Alternate gene names: 85058035

Gene position: 74148-72688 (Counterclockwise)

Preceding gene: 85058043

Following gene: 85058034

Centisome position: 1.78

GC content: 50.24

Gene sequence:

>1461_bases
ATGGGTGGTATATCAGTAACAGGCATAAGCGATTCGCTCATGGAGATGCAGGCCAAAAAAAATACTTTGTTGCTGCAACC
CTATCAACTACGGCAAAAAAACATCGAAAGTAAAATCAGCGCATGGGGTAAAATCCGCTCAAGCCTGCAAACCCTGCTGG
AGAAAAGCAACGCCCTAAAAAATGACGCCTTTTACGCCATGAAAATGAGCGAGAACAAAGCGTTTAGCGCCAGCGCCAGC
AGCGGCGCGATGGCGGGAACCCATAACATCAGGGTTAGTCAGTTGGCGCATAATCACACCCTGTCATTAACGATGGAAAA
AGGGATCGACACGCCATTGGGCAATAGCGCGGCAACCCGTAACTTGAAAATCAGCCAGAAGGGTGAAAACGGCCAGATAA
AGGAAACTGTTATTTCTCTCGCGCAGGAGGAAACCAGTCTGGCGGGCATTGCCAAATCCATCAATGGCAAAAATGCCGGT
ATCCGCGCTGAAGTGAAGAGTGTGGACAATGAGGGTACGCAGCGTTTGATTTTGCGGGCGCAGGATTCTGGCTCGGCGGG
CGAAATGGCCCTCTCCGTCGAAGGCGATACCACCCTGGCCGCCATAATGAATTACACCACACCCCCGGAGGAACCGGGTG
ATTCGACCGACAGCGGAGAAGTGTCTGAGAAAATAAAGCAGGATCTGCCGGCAACCGATGCCATAATCTGGGTGGATGGA
AATAAGTACACCCGTTCAAGTAACACCATCAATGATATCCTGACCGGCGTCACCCTGACGCTGAAGCAAACATCCAAAGA
CGATGAATCTGAGGCGCTGACCCTAAGTCCAGACGAAAGCGCGGTGCAAGAAGCGGTAGAGGAATTTGTCACTGCGTTCA
ACGACTATATTACTCAGTCCTCCAGCTTAAGTAAATTCACTACCGCCAACTATTCAAATTTGAAGACCGATACTGTTGCG
CTGCCCGACGCGACTAACGGTCCCCTGGCCGGTGAAAGTTTATTGACCGACCTGCAGGCCCTATTGCGCCGCGATGCCGG
GAGTAACTATGGCAATGACGACGTTACGTCAATCGCCGATCTGGGTATTAAGGTGGACGCCAAGACCGGCAAGCTCGAAC
TGGATAGCACCAAGCTGAAGAATAAAATCCATACCAACCCGGAGGAGGTACAACGGCTGTTTCTGGGTACTGAAGAAAAA
CCTGGCCTGGCGGGCGTCATGTCCGACCATATTAAGGGGTATGTTGGTAGAGACGGCAAAGGCAATATCATCAAAGACGA
GACCGAAAAGCTCGAAAAGGATAAGAAAGAAGCCAAAAAGCAGTTGGAACGCACTGAGGCGACCATTGAGGCAAGAATGC
GTGCTTTTCAGAAACAATATCAACAGATGGAGGTCGCTATAACGAAGTTACAATCCCTTCAGGGGTCTCTCTCCGCGATA
CAGACTTTGAGTAAAAATTAA

Upstream 100 bases:

>100_bases
TTATTTCTTTATCCTCGTTCTCTTGGGTCAATTAAACTTTTCTTCCTCGCGGCCGATAGCAATGCATACAATCCACTTGA
TGAATAACGGGAGAGTAAGC

Downstream 100 bases:

>100_bases
TTCCGTCGCCGGCTCGCCCGTTATCCTGCCGATGACCCCACCGCCTTATAACCTTATGTCGCCACTCGGGAGAAAAAACG
ATGTCTGTGGATCAGGGCAT

Product: flagellar hook-associated protein 2 FliD

Products: NA

Alternate protein names: HAP2; Filament cap protein [H]

Number of amino acids: Translated: 486; Mature: 485

Protein sequence:

>486_residues
MGGISVTGISDSLMEMQAKKNTLLLQPYQLRQKNIESKISAWGKIRSSLQTLLEKSNALKNDAFYAMKMSENKAFSASAS
SGAMAGTHNIRVSQLAHNHTLSLTMEKGIDTPLGNSAATRNLKISQKGENGQIKETVISLAQEETSLAGIAKSINGKNAG
IRAEVKSVDNEGTQRLILRAQDSGSAGEMALSVEGDTTLAAIMNYTTPPEEPGDSTDSGEVSEKIKQDLPATDAIIWVDG
NKYTRSSNTINDILTGVTLTLKQTSKDDESEALTLSPDESAVQEAVEEFVTAFNDYITQSSSLSKFTTANYSNLKTDTVA
LPDATNGPLAGESLLTDLQALLRRDAGSNYGNDDVTSIADLGIKVDAKTGKLELDSTKLKNKIHTNPEEVQRLFLGTEEK
PGLAGVMSDHIKGYVGRDGKGNIIKDETEKLEKDKKEAKKQLERTEATIEARMRAFQKQYQQMEVAITKLQSLQGSLSAI
QTLSKN

Sequences:

>Translated_486_residues
MGGISVTGISDSLMEMQAKKNTLLLQPYQLRQKNIESKISAWGKIRSSLQTLLEKSNALKNDAFYAMKMSENKAFSASAS
SGAMAGTHNIRVSQLAHNHTLSLTMEKGIDTPLGNSAATRNLKISQKGENGQIKETVISLAQEETSLAGIAKSINGKNAG
IRAEVKSVDNEGTQRLILRAQDSGSAGEMALSVEGDTTLAAIMNYTTPPEEPGDSTDSGEVSEKIKQDLPATDAIIWVDG
NKYTRSSNTINDILTGVTLTLKQTSKDDESEALTLSPDESAVQEAVEEFVTAFNDYITQSSSLSKFTTANYSNLKTDTVA
LPDATNGPLAGESLLTDLQALLRRDAGSNYGNDDVTSIADLGIKVDAKTGKLELDSTKLKNKIHTNPEEVQRLFLGTEEK
PGLAGVMSDHIKGYVGRDGKGNIIKDETEKLEKDKKEAKKQLERTEATIEARMRAFQKQYQQMEVAITKLQSLQGSLSAI
QTLSKN
>Mature_485_residues
GGISVTGISDSLMEMQAKKNTLLLQPYQLRQKNIESKISAWGKIRSSLQTLLEKSNALKNDAFYAMKMSENKAFSASASS
GAMAGTHNIRVSQLAHNHTLSLTMEKGIDTPLGNSAATRNLKISQKGENGQIKETVISLAQEETSLAGIAKSINGKNAGI
RAEVKSVDNEGTQRLILRAQDSGSAGEMALSVEGDTTLAAIMNYTTPPEEPGDSTDSGEVSEKIKQDLPATDAIIWVDGN
KYTRSSNTINDILTGVTLTLKQTSKDDESEALTLSPDESAVQEAVEEFVTAFNDYITQSSSLSKFTTANYSNLKTDTVAL
PDATNGPLAGESLLTDLQALLRRDAGSNYGNDDVTSIADLGIKVDAKTGKLELDSTKLKNKIHTNPEEVQRLFLGTEEKP
GLAGVMSDHIKGYVGRDGKGNIIKDETEKLEKDKKEAKKQLERTEATIEARMRAFQKQYQQMEVAITKLQSLQGSLSAIQ
TLSKN

Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the

COG id: COG1345

COG function: function code N; Flagellar capping protein

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliD family [H]

Homologues:

Organism=Escherichia coli, GI1788233, Length=472, Percent_Identity=28.3898305084746, Blast_Score=141, Evalue=1e-34,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010810
- InterPro:   IPR010809
- InterPro:   IPR003481 [H]

Pfam domain/function: PF07196 Flagellin_IN; PF07195 FliD_C; PF02465 FliD_N [H]

EC number: NA

Molecular weight: Translated: 52516; Mature: 52385

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGISVTGISDSLMEMQAKKNTLLLQPYQLRQKNIESKISAWGKIRSSLQTLLEKSNALK
CCCEEECCCCHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NDAFYAMKMSENKAFSASASSGAMAGTHNIRVSQLAHNHTLSLTMEKGIDTPLGNSAATR
CCCEEEEEECCCCCCCCCCCCCCCCCCCCEEHHHHHCCCEEEEEECCCCCCCCCCCCCCC
NLKISQKGENGQIKETVISLAQEETSLAGIAKSINGKNAGIRAEVKSVDNEGTQRLILRA
CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHCCCCCCEEEEEEE
QDSGSAGEMALSVEGDTTLAAIMNYTTPPEEPGDSTDSGEVSEKIKQDLPATDAIIWVDG
CCCCCCCCEEEEECCCCCEEHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECC
NKYTRSSNTINDILTGVTLTLKQTSKDDESEALTLSPDESAVQEAVEEFVTAFNDYITQS
CEEECCCCCHHHHHHCCEEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCC
SSLSKFTTANYSNLKTDTVALPDATNGPLAGESLLTDLQALLRRDAGSNYGNDDVTSIAD
CCCCHHCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LGIKVDAKTGKLELDSTKLKNKIHTNPEEVQRLFLGTEEKPGLAGVMSDHIKGYVGRDGK
CCEEEECCCCCEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCC
GNIIKDETEKLEKDKKEAKKQLERTEATIEARMRAFQKQYQQMEVAITKLQSLQGSLSAI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTLSKN
HHHHCC
>Mature Secondary Structure 
GGISVTGISDSLMEMQAKKNTLLLQPYQLRQKNIESKISAWGKIRSSLQTLLEKSNALK
CCEEECCCCHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NDAFYAMKMSENKAFSASASSGAMAGTHNIRVSQLAHNHTLSLTMEKGIDTPLGNSAATR
CCCEEEEEECCCCCCCCCCCCCCCCCCCCEEHHHHHCCCEEEEEECCCCCCCCCCCCCCC
NLKISQKGENGQIKETVISLAQEETSLAGIAKSINGKNAGIRAEVKSVDNEGTQRLILRA
CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHCCCCCCEEEEEEE
QDSGSAGEMALSVEGDTTLAAIMNYTTPPEEPGDSTDSGEVSEKIKQDLPATDAIIWVDG
CCCCCCCCEEEEECCCCCEEHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECC
NKYTRSSNTINDILTGVTLTLKQTSKDDESEALTLSPDESAVQEAVEEFVTAFNDYITQS
CEEECCCCCHHHHHHCCEEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCC
SSLSKFTTANYSNLKTDTVALPDATNGPLAGESLLTDLQALLRRDAGSNYGNDDVTSIAD
CCCCHHCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LGIKVDAKTGKLELDSTKLKNKIHTNPEEVQRLFLGTEEKPGLAGVMSDHIKGYVGRDGK
CCEEEECCCCCEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCC
GNIIKDETEKLEKDKKEAKKQLERTEATIEARMRAFQKQYQQMEVAITKLQSLQGSLSAI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTLSKN
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8996114 [H]