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The map label for this gene is cdaR [H]

Identifier: 84626013

GI number: 84626013

Start: 4919087

End: 4919662

Strand: Reverse

Name: cdaR [H]

Synonym: XOO_4356

Alternate gene names: 84626013

Gene position: 4919662-4919087 (Counterclockwise)

Preceding gene: 84626014

Following gene: 84626012

Centisome position: 99.58

GC content: 66.32

Gene sequence:

>576_bases
ATGCGATGGACCACTCCGGCGTCATCATCGCCAGCGGCGCGCCGGCACGTTTCGGCCGGCTGCACGCGCGTGCACAGTCT
GTTCGAGCGCATGCGCGCCAGCAGCCGGCTGCGGATCCGGCTGGCCCTGGTCCAGTATTTTCCGCAGTCCAACGGCCTGG
CGTTGTCGCACCAGATCGCGCGCACCACCATGCGCATCGGCAAGGCGCGTGCGCCGCACGCCGATGCATTCTTCTACGAC
AACTATCGCCTGCCGCTGCTGGCAGACGACCTGCGTCAGGCCTGGCAAGCCGAGCAATTGCGCAAGCCGCTGCAGGCATT
GCTGGCGCAGGACCGTCGCGGCCAGTTGTTGAAGACCTTGTCGGTTTGGTTTGGTGCCGGCATGCGCATGGCCCCCACCG
CCAAGGCGCTGGGCATCCATCGCAATACCCTGAGTTACCGCATGCAGCGCATGCAGGAACTGTGCGCAGTGGACCTGAGC
AACACCGACGACTGCATGCGCCTGTACCTGGCGCTGCAGATGCGCGACGACAGCGCCGCCACCGTGGCGAACATGGACAC
GGCCAGCGCCGACTGA

Upstream 100 bases:

>100_bases
CTCGATCGCATCAACAGGCCCCAGCCCATGCTCACGCTCGACCGCACCCTGGCGCAGTCCAGCGTCGACCGCGCGATGAC
CATCATCGACGGCAACGTCG

Downstream 100 bases:

>100_bases
GTGCCGCACCACCCGCCCAGCGCGCCCAATGCGGTGCTGTGCAGTGGCGCACGGAACGCCGCCTTGGCTGATATGCGCAT
TCCGCTAGACTGGGCAAAGT

Product: hypothetical protein

Products: NA

Alternate protein names: Sugar diacid regulator [H]

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MRWTTPASSSPAARRHVSAGCTRVHSLFERMRASSRLRIRLALVQYFPQSNGLALSHQIARTTMRIGKARAPHADAFFYD
NYRLPLLADDLRQAWQAEQLRKPLQALLAQDRRGQLLKTLSVWFGAGMRMAPTAKALGIHRNTLSYRMQRMQELCAVDLS
NTDDCMRLYLALQMRDDSAATVANMDTASAD

Sequences:

>Translated_191_residues
MRWTTPASSSPAARRHVSAGCTRVHSLFERMRASSRLRIRLALVQYFPQSNGLALSHQIARTTMRIGKARAPHADAFFYD
NYRLPLLADDLRQAWQAEQLRKPLQALLAQDRRGQLLKTLSVWFGAGMRMAPTAKALGIHRNTLSYRMQRMQELCAVDLS
NTDDCMRLYLALQMRDDSAATVANMDTASAD
>Mature_191_residues
MRWTTPASSSPAARRHVSAGCTRVHSLFERMRASSRLRIRLALVQYFPQSNGLALSHQIARTTMRIGKARAPHADAFFYD
NYRLPLLADDLRQAWQAEQLRKPLQALLAQDRRGQLLKTLSVWFGAGMRMAPTAKALGIHRNTLSYRMQRMQELCAVDLS
NTDDCMRLYLALQMRDDSAATVANMDTASAD

Specific function: Seems to regulate the expression of the operons for the enzymes involved in D-galactarate, D-glucarate and D-glycerate utilization [H]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=155, Percent_Identity=43.8709677419355, Blast_Score=135, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 21581; Mature: 21581

Theoretical pI: Translated: 11.08; Mature: 11.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWTTPASSSPAARRHVSAGCTRVHSLFERMRASSRLRIRLALVQYFPQSNGLALSHQIA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEHHHHHH
RTTMRIGKARAPHADAFFYDNYRLPLLADDLRQAWQAEQLRKPLQALLAQDRRGQLLKTL
HHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
SVWFGAGMRMAPTAKALGIHRNTLSYRMQRMQELCAVDLSNTDDCMRLYLALQMRDDSAA
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCH
TVANMDTASAD
HEECCCCCCCC
>Mature Secondary Structure
MRWTTPASSSPAARRHVSAGCTRVHSLFERMRASSRLRIRLALVQYFPQSNGLALSHQIA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEHHHHHH
RTTMRIGKARAPHADAFFYDNYRLPLLADDLRQAWQAEQLRKPLQALLAQDRRGQLLKTL
HHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
SVWFGAGMRMAPTAKALGIHRNTLSYRMQRMQELCAVDLSNTDDCMRLYLALQMRDDSAA
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCH
TVANMDTASAD
HEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503; 10762278 [H]