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The map label for this gene is recD [H]

Identifier: 84625869

GI number: 84625869

Start: 4753376

End: 4755628

Strand: Reverse

Name: recD [H]

Synonym: XOO_4212

Alternate gene names: 84625869

Gene position: 4755628-4753376 (Counterclockwise)

Preceding gene: 84625870

Following gene: 84625868

Centisome position: 96.26

GC content: 72.04

Gene sequence:

>2253_bases
ATGAACCACCCGAATCTGCTCACTGCGCTCAACCAGAGTGGCGCCCTGCGCACCCTGGATCTGGCCTTCGCGCAAAGCCT
GCAACGCCTGGAACCGGAGACCGACCCACAGGTGCTGGCCGGTGCCGCGCTCGCCTCGCTGGCCGTCACCAGCGGCCACG
CCGGGCTGGACCCCGTCCGCGCTGCCATGTTGCTGGACGCGCGCGATGGCCCATCGCCCCCATTCCCGGACCCCGCCGAC
TGGCAACGCTGCCTGGCCGCCTCGCGCTGGGTCGACCAACCACAGCCCGAAGACCCGGCTGCCGCCGACCGCCCGCTCGT
CCTCGAACGCGGTCTGCTCTACCTGCGCCGTTACCGCGAGTACGAACGCCGCCTGGCCCTGGGCCTGCAGCGCATCGCCG
CCCAAACCTCGCCCCCCTTCGCCGCCACCCTGGAGCCGCTGTTCGCACAGTTGTTCCCGCAAGCCACCCCTCTCCCCCGG
GGCGAGGGTGCCCGCAGGGCGGGTGAGGGTAAGGGCCTGCCCGAGCCATCCCTCCAGCAAGAGGGCACAAATCCGCCCGT
GCTATCCAGCAACGGCACGAACCAAACAGCACCATCCCCCACCCCAGATCGCCAAGCGCAGGCCGCAGCCCTCGCGCTGC
GCCGCGCGCTACTGCTGGTCACCGGCGGCCCCGGCACCGGCAAAACCACCACCATCGCCCGCCTGTTGTTGCTACGCATC
GCCCAGGCACACGCATCCAACACCCCGGCCCCACGCATCGCCCTGGCCGCACCCACCGGCCGCGCCGCCGAGCGCATGGC
CGAAAGCCTGCGCGCCGCCGTCGCGCGCGCCATCGCCGACGGTATCGACCCCAGCCTGGCCGACGCCCTGCCCACCGGCG
CCAGCACGCTGCACCGTCTGCTCGGCGTCATTCCGGATTCCCCGCACTTCCGCCACAACGCCGACAACCCGCTGCCATTC
GATCTGATCGTCGTCGACGAAGCCTCCATGGTCGACCTGCCGCTGATGTGCAAACTGGTCGAAGCCGTCGCCGATGGCAC
CCAGCTGATCCTGCTTGGCGACGCCGACCAGCTGCCCTCGGTGGAAGCCGGCGACGTGCTCGCCGCCATCCTGCAGGCCG
CCGGCCCCGGCGACGCGTTGCAGCCCGACGACGCCCAGGCGTTGCAACCGCTGCTCGGCGGCGCGCCTGTGGGCAGTCCA
CGCCCGGTCACCTCTCACATCCACACCGGCGGCCTGGCCGGTCACCGCGTGCACCTGCTGCGTGGCTATCGCCAGGCGGA
CGAATTCGCACTCGCCCCACTGGCCGACGCCATCCGCGCCGGCGATGCCGACACCGCCCTGGCCCTGCTGCGTAGCGGCG
AACTGGCCGGCGTGCACTTCCACGAAGACGGCGAAGACCCGCTGGCACTCGGCCGCGACGCGCTGCTCGCCCACTGGCGC
GCGCTGGCCACTGCCCGAGATCCCGCTGCCGCATTGCGCGACGCAAGCCGCCTACGCCTGCTCACCGCGGTGCGTGCCGG
CCCGCAAGGCGCACGTGGCCTCAACGCCCGCATCGAACAACTGCTGGCCGAAACCGGCTCCGGCGCCCGTCGCCTTGGCG
GCGCTTCGCCCTGGTTCCAGGGCCGCCTGCTGCTGATCACCACAAACAGCTACCGCCACGGCCTGTTCAACGGCGACGTC
GGCATCTGTCTGCCCAGCGACCCGCGCGCCTTGCCTGGCCGCAGCGACGCGGGCCCTTCCCCCGGCCAGGGCGACGCAAG
TGCCGTGACCGCGCGCGGCCACGCGGCACCGTCGTCAAGGCCGGGCCACGCTGGCGACAGCGCACACCATGACGCCCCCG
CCACCGACAGCCGTGCCCAAGGCCCCTTGGTCGCCTGGTTCGAAGGCGACGGCCAGGTGCGCGGCTTCCACCCCGCCGCA
CTGCCCGCGCACGAAAGCGCCTTCGCCATGACCGTGCACAAGGCCCAAGGCAGCGAATTCGACGAGGTCTGGCTGCAACT
GCCGACCCGCGACGCCCGCGTACTCAGCCGCGAACTGCTCTACACCGGCATCACCCGCGCCCGCCGCGCCCTGCACCTGG
CCGGCAGCGAAGCGGTCATCCGCGCCGCACTGGCGCGCCACGCCGCGCGGATCTCGGGGTTGGCGTGGCGGTTGGGTGCA
AAAGACGACAAGCCACAGCCCGTTCCAGTACCCACGCCAGCGCCGCTTCCACAACCGCCGCCGAGTGCGCCTGTGCAAGG
TGCGCTGTTCTGA

Upstream 100 bases:

>100_bases
CCCGGCGTCAATGCTGCGGAGCGCTCGCACCGCAAGCCAGGACCAGTGCGTGGAGCATGGTGTGGCATGGAAGGACGTTC
GCCCCAGGAGCGCCCACCCC

Downstream 100 bases:

>100_bases
TCAAAACCAATCGGTGCCGGCGCTTGTCCCGCAATGGCAGACTGCACATTCGTAACGGGTTGCGTTATATAACGCAGGCC
GTTATGGTTGTCACATGATC

Product: exodeoxyribonuclease V alpha chain

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 750; Mature: 750

Protein sequence:

>750_residues
MNHPNLLTALNQSGALRTLDLAFAQSLQRLEPETDPQVLAGAALASLAVTSGHAGLDPVRAAMLLDARDGPSPPFPDPAD
WQRCLAASRWVDQPQPEDPAAADRPLVLERGLLYLRRYREYERRLALGLQRIAAQTSPPFAATLEPLFAQLFPQATPLPR
GEGARRAGEGKGLPEPSLQQEGTNPPVLSSNGTNQTAPSPTPDRQAQAAALALRRALLLVTGGPGTGKTTTIARLLLLRI
AQAHASNTPAPRIALAAPTGRAAERMAESLRAAVARAIADGIDPSLADALPTGASTLHRLLGVIPDSPHFRHNADNPLPF
DLIVVDEASMVDLPLMCKLVEAVADGTQLILLGDADQLPSVEAGDVLAAILQAAGPGDALQPDDAQALQPLLGGAPVGSP
RPVTSHIHTGGLAGHRVHLLRGYRQADEFALAPLADAIRAGDADTALALLRSGELAGVHFHEDGEDPLALGRDALLAHWR
ALATARDPAAALRDASRLRLLTAVRAGPQGARGLNARIEQLLAETGSGARRLGGASPWFQGRLLLITTNSYRHGLFNGDV
GICLPSDPRALPGRSDAGPSPGQGDASAVTARGHAAPSSRPGHAGDSAHHDAPATDSRAQGPLVAWFEGDGQVRGFHPAA
LPAHESAFAMTVHKAQGSEFDEVWLQLPTRDARVLSRELLYTGITRARRALHLAGSEAVIRAALARHAARISGLAWRLGA
KDDKPQPVPVPTPAPLPQPPPSAPVQGALF

Sequences:

>Translated_750_residues
MNHPNLLTALNQSGALRTLDLAFAQSLQRLEPETDPQVLAGAALASLAVTSGHAGLDPVRAAMLLDARDGPSPPFPDPAD
WQRCLAASRWVDQPQPEDPAAADRPLVLERGLLYLRRYREYERRLALGLQRIAAQTSPPFAATLEPLFAQLFPQATPLPR
GEGARRAGEGKGLPEPSLQQEGTNPPVLSSNGTNQTAPSPTPDRQAQAAALALRRALLLVTGGPGTGKTTTIARLLLLRI
AQAHASNTPAPRIALAAPTGRAAERMAESLRAAVARAIADGIDPSLADALPTGASTLHRLLGVIPDSPHFRHNADNPLPF
DLIVVDEASMVDLPLMCKLVEAVADGTQLILLGDADQLPSVEAGDVLAAILQAAGPGDALQPDDAQALQPLLGGAPVGSP
RPVTSHIHTGGLAGHRVHLLRGYRQADEFALAPLADAIRAGDADTALALLRSGELAGVHFHEDGEDPLALGRDALLAHWR
ALATARDPAAALRDASRLRLLTAVRAGPQGARGLNARIEQLLAETGSGARRLGGASPWFQGRLLLITTNSYRHGLFNGDV
GICLPSDPRALPGRSDAGPSPGQGDASAVTARGHAAPSSRPGHAGDSAHHDAPATDSRAQGPLVAWFEGDGQVRGFHPAA
LPAHESAFAMTVHKAQGSEFDEVWLQLPTRDARVLSRELLYTGITRARRALHLAGSEAVIRAALARHAARISGLAWRLGA
KDDKPQPVPVPTPAPLPQPPPSAPVQGALF
>Mature_750_residues
MNHPNLLTALNQSGALRTLDLAFAQSLQRLEPETDPQVLAGAALASLAVTSGHAGLDPVRAAMLLDARDGPSPPFPDPAD
WQRCLAASRWVDQPQPEDPAAADRPLVLERGLLYLRRYREYERRLALGLQRIAAQTSPPFAATLEPLFAQLFPQATPLPR
GEGARRAGEGKGLPEPSLQQEGTNPPVLSSNGTNQTAPSPTPDRQAQAAALALRRALLLVTGGPGTGKTTTIARLLLLRI
AQAHASNTPAPRIALAAPTGRAAERMAESLRAAVARAIADGIDPSLADALPTGASTLHRLLGVIPDSPHFRHNADNPLPF
DLIVVDEASMVDLPLMCKLVEAVADGTQLILLGDADQLPSVEAGDVLAAILQAAGPGDALQPDDAQALQPLLGGAPVGSP
RPVTSHIHTGGLAGHRVHLLRGYRQADEFALAPLADAIRAGDADTALALLRSGELAGVHFHEDGEDPLALGRDALLAHWR
ALATARDPAAALRDASRLRLLTAVRAGPQGARGLNARIEQLLAETGSGARRLGGASPWFQGRLLLITTNSYRHGLFNGDV
GICLPSDPRALPGRSDAGPSPGQGDASAVTARGHAAPSSRPGHAGDSAHHDAPATDSRAQGPLVAWFEGDGQVRGFHPAA
LPAHESAFAMTVHKAQGSEFDEVWLQLPTRDARVLSRELLYTGITRARRALHLAGSEAVIRAALARHAARISGLAWRLGA
KDDKPQPVPVPTPAPLPQPPPSAPVQGALF

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=713, Percent_Identity=32.8190743338008, Blast_Score=245, Evalue=8e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 78506; Mature: 78506

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHPNLLTALNQSGALRTLDLAFAQSLQRLEPETDPQVLAGAALASLAVTSGHAGLDPVR
CCCCHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHH
AAMLLDARDGPSPPFPDPADWQRCLAASRWVDQPQPEDPAAADRPLVLERGLLYLRRYRE
HHHHEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
YERRLALGLQRIAAQTSPPFAATLEPLFAQLFPQATPLPRGEGARRAGEGKGLPEPSLQQ
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
EGTNPPVLSSNGTNQTAPSPTPDRQAQAAALALRRALLLVTGGPGTGKTTTIARLLLLRI
CCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHH
AQAHASNTPAPRIALAAPTGRAAERMAESLRAAVARAIADGIDPSLADALPTGASTLHRL
HHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHH
LGVIPDSPHFRHNADNPLPFDLIVVDEASMVDLPLMCKLVEAVADGTQLILLGDADQLPS
HHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC
VEAGDVLAAILQAAGPGDALQPDDAQALQPLLGGAPVGSPRPVTSHIHTGGLAGHRVHLL
CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHH
RGYRQADEFALAPLADAIRAGDADTALALLRSGELAGVHFHEDGEDPLALGRDALLAHWR
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHH
ALATARDPAAALRDASRLRLLTAVRAGPQGARGLNARIEQLLAETGSGARRLGGASPWFQ
HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCC
GRLLLITTNSYRHGLFNGDVGICLPSDPRALPGRSDAGPSPGQGDASAVTARGHAAPSSR
CEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
PGHAGDSAHHDAPATDSRAQGPLVAWFEGDGQVRGFHPAALPAHESAFAMTVHKAQGSEF
CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCEEEEEECCCCCCH
DEVWLQLPTRDARVLSRELLYTGITRARRALHLAGSEAVIRAALARHAARISGLAWRLGA
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECCC
KDDKPQPVPVPTPAPLPQPPPSAPVQGALF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNHPNLLTALNQSGALRTLDLAFAQSLQRLEPETDPQVLAGAALASLAVTSGHAGLDPVR
CCCCHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHH
AAMLLDARDGPSPPFPDPADWQRCLAASRWVDQPQPEDPAAADRPLVLERGLLYLRRYRE
HHHHEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
YERRLALGLQRIAAQTSPPFAATLEPLFAQLFPQATPLPRGEGARRAGEGKGLPEPSLQQ
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
EGTNPPVLSSNGTNQTAPSPTPDRQAQAAALALRRALLLVTGGPGTGKTTTIARLLLLRI
CCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHH
AQAHASNTPAPRIALAAPTGRAAERMAESLRAAVARAIADGIDPSLADALPTGASTLHRL
HHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHH
LGVIPDSPHFRHNADNPLPFDLIVVDEASMVDLPLMCKLVEAVADGTQLILLGDADQLPS
HHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC
VEAGDVLAAILQAAGPGDALQPDDAQALQPLLGGAPVGSPRPVTSHIHTGGLAGHRVHLL
CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHH
RGYRQADEFALAPLADAIRAGDADTALALLRSGELAGVHFHEDGEDPLALGRDALLAHWR
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHH
ALATARDPAAALRDASRLRLLTAVRAGPQGARGLNARIEQLLAETGSGARRLGGASPWFQ
HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCC
GRLLLITTNSYRHGLFNGDVGICLPSDPRALPGRSDAGPSPGQGDASAVTARGHAAPSSR
CEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
PGHAGDSAHHDAPATDSRAQGPLVAWFEGDGQVRGFHPAALPAHESAFAMTVHKAQGSEF
CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCEEEEEECCCCCCH
DEVWLQLPTRDARVLSRELLYTGITRARRALHLAGSEAVIRAALARHAARISGLAWRLGA
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECCC
KDDKPQPVPVPTPAPLPQPPPSAPVQGALF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3537961; 9278503; 3537960 [H]