| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is 84625784
Identifier: 84625784
GI number: 84625784
Start: 4653581
End: 4654405
Strand: Reverse
Name: 84625784
Synonym: XOO_4127
Alternate gene names: NA
Gene position: 4654405-4653581 (Counterclockwise)
Preceding gene: 84625785
Following gene: 84625783
Centisome position: 94.21
GC content: 63.52
Gene sequence:
>825_bases GTGGGCGCGCTATATCGTGGGGTTCTGCGCGATGTTCATGCTGGTGGCGATCATCAGCAGGTGGCGATCATCAGCAGAGT GATCACGCACAAGAAAATCTTCAAGGACTTCTTTACCTTCCGCCCGGGCAAGGGGCTGCGGTCGTGGTTGGATTTCCACA ACGTCAGCGCTGTGAACGCATTGCCGTACAACGCGATGATGACTGACAACGGCGTCGTGACCTTGATGTTCATGTACCTG CCGTGGGGCATCAAGGCGCGCCATGCAGGCGATGACATGCGCTTCTATGGCGAGGCGGCCAATCGGGTGGCCGATACGCG TAAGGCGGCCGACGTGCCGGCGCACATGCTGCCGCTGGAGCAGTTCGTGGCACGTGCGCGCAGCGACTGGCGCGGTGGCG ATGTGGGCAGCGTGGCGGTGTCGTTCCCCAACGATGCGCATGCCGCCGTGGGCGCAACCCAACTGGCCGAACACCTCTCC ACCGATGCGCCGTCGATCCTGTTCGATGCCGTCAATGGCGAGCGCTTGCAGCGCAGCGGGCCGCCGGGCGGTGCCAGCCA GACGCGCGGTGTGATGGTAGGACTGCATCTGGCCCACTTCGTCGGTGCATGGCTGCGCGCATTGTTCTTCGGCTCTGGCT TGCTGGGTTGCCTGATGGTGGCCAGCGGTGTGGTGATGTGGGCAGTGAAAGAGCGCCCCAAGCAGTTGAAGGCCGGACGC ATCGGCTTCGGCCTGCGCCTGGTGGACGCACTCAATATCGGCACAGTGGCCGGCTTGCCGATCGCCTTCGCCAGTTTCTT CTGGGCAACCGCGTGTTGCCAGTGA
Upstream 100 bases:
>100_bases TCATCGACCCGGCCACCAGCAAGGACATCGCCGCACGCGACACGCTGGGCGGCGAATTCTTCTACCGGCTGCATTTCGAC CTGCACTATGTGCCGGTCGT
Downstream 100 bases:
>100_bases GTCTGGAAGCGCGTGCACAGATGGATGCCAATCTGTTTTCGCTGCGTGGGCCGCCGCGTTGCTGGCGGCATTGGTATGGC CGCGGCGTGCGATGTGCAGC
Product: hypothetical protein
Products: NA
Alternate protein names: Iron-Regulated Membrane Protein; PepSY-Associated TM Helix; PepSY-Associated TM Helix Domain Protein; PepSY-Associated TM Helix Family; Aspartate Kinase; PepSY-Associated Membrane Protein; PepSY-Associated TM Helix Family Protein; Iron Uptake Protein; Iron-Regulated Membrane Protein DUF; Transmembrane PepSY Domain-Containing Protein; PepSY Domain Protein; Iron Regulated Protein; Pepsy-Associated Tm Helix Domain Protein
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MGALYRGVLRDVHAGGDHQQVAIISRVITHKKIFKDFFTFRPGKGLRSWLDFHNVSAVNALPYNAMMTDNGVVTLMFMYL PWGIKARHAGDDMRFYGEAANRVADTRKAADVPAHMLPLEQFVARARSDWRGGDVGSVAVSFPNDAHAAVGATQLAEHLS TDAPSILFDAVNGERLQRSGPPGGASQTRGVMVGLHLAHFVGAWLRALFFGSGLLGCLMVASGVVMWAVKERPKQLKAGR IGFGLRLVDALNIGTVAGLPIAFASFFWATACCQ
Sequences:
>Translated_274_residues MGALYRGVLRDVHAGGDHQQVAIISRVITHKKIFKDFFTFRPGKGLRSWLDFHNVSAVNALPYNAMMTDNGVVTLMFMYL PWGIKARHAGDDMRFYGEAANRVADTRKAADVPAHMLPLEQFVARARSDWRGGDVGSVAVSFPNDAHAAVGATQLAEHLS TDAPSILFDAVNGERLQRSGPPGGASQTRGVMVGLHLAHFVGAWLRALFFGSGLLGCLMVASGVVMWAVKERPKQLKAGR IGFGLRLVDALNIGTVAGLPIAFASFFWATACCQ >Mature_273_residues GALYRGVLRDVHAGGDHQQVAIISRVITHKKIFKDFFTFRPGKGLRSWLDFHNVSAVNALPYNAMMTDNGVVTLMFMYLP WGIKARHAGDDMRFYGEAANRVADTRKAADVPAHMLPLEQFVARARSDWRGGDVGSVAVSFPNDAHAAVGATQLAEHLST DAPSILFDAVNGERLQRSGPPGGASQTRGVMVGLHLAHFVGAWLRALFFGSGLLGCLMVASGVVMWAVKERPKQLKAGRI GFGLRLVDALNIGTVAGLPIAFASFFWATACCQ
Specific function: Unknown
COG id: COG3182
COG function: function code S; Uncharacterized iron-regulated membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29593; Mature: 29461
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: PS00584 PFKB_KINASES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGALYRGVLRDVHAGGDHQQVAIISRVITHKKIFKDFFTFRPGKGLRSWLDFHNVSAVNA CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHC LPYNAMMTDNGVVTLMFMYLPWGIKARHAGDDMRFYGEAANRVADTRKAADVPAHMLPLE CCCCEEECCCCHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH QFVARARSDWRGGDVGSVAVSFPNDAHAAVGATQLAEHLSTDAPSILFDAVNGERLQRSG HHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHEEECCCCHHHHCCC PPGGASQTRGVMVGLHLAHFVGAWLRALFFGSGLLGCLMVASGVVMWAVKERPKQLKAGR CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEHHHHCHHHHHCCC IGFGLRLVDALNIGTVAGLPIAFASFFWATACCQ CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure GALYRGVLRDVHAGGDHQQVAIISRVITHKKIFKDFFTFRPGKGLRSWLDFHNVSAVNA CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHC LPYNAMMTDNGVVTLMFMYLPWGIKARHAGDDMRFYGEAANRVADTRKAADVPAHMLPLE CCCCEEECCCCHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH QFVARARSDWRGGDVGSVAVSFPNDAHAAVGATQLAEHLSTDAPSILFDAVNGERLQRSG HHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHEEECCCCHHHHCCC PPGGASQTRGVMVGLHLAHFVGAWLRALFFGSGLLGCLMVASGVVMWAVKERPKQLKAGR CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEHHHHCHHHHHCCC IGFGLRLVDALNIGTVAGLPIAFASFFWATACCQ CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA