| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is aceE [H]
Identifier: 84625667
GI number: 84625667
Start: 4519407
End: 4522094
Strand: Reverse
Name: aceE [H]
Synonym: XOO_4010
Alternate gene names: 84625667
Gene position: 4522094-4519407 (Counterclockwise)
Preceding gene: 84625668
Following gene: 84625666
Centisome position: 91.54
GC content: 64.73
Gene sequence:
>2688_bases ATGAACTGGTTGAACGAAGTGCTGCACAACGATCCGAACCCGCTAGAGACGCAGGAGTGGCTCGAATCGATCAAGGCCGT CATCGACGTTGAAGGCCCGGAGCGCGCCCATCAGCTGCTGGAAGGCATGGTCGAACAGACCCGTCGCGCCGGCGCTTACC TGCCCTTCTCGCCCACCACAGAGTACGTCAACACCATCGCCCCGGCCAACGAGGCCAAGCACCCCGGCGATTCGGCGCTG GAGTGGAAGATCCGCTCGATCATCCGCTGGAACGCCATGGCCACGGTCGTGCGGGCTAACCGCAAGCCGGGCGACCTGGG CGGCCACATCGCCTCGTTCGCTTCCAGCGCCACGCTGTACGACGTGGGCTTCAACCACTTCTGGCGCGCCCCCAGCGACC AGCACCCGGGCGACCTGCTGTTCATCCAGGGCCACAGCGCCCCGGGCATCTACGCCCGCGCCTTCCTTGAAGGCCGCATC AGCGAATCGCAGCTGGACAACTTCCGCATGGAAGTGGACGGCCAGGGCATCTCGTCCTACCCGCACCCGTGGCTGATGCC CGAATTCTGGCAGACCCCCACCGTGTCGATGGGCCTGGGCCCGCTGGCCGCCATCTACCAGGCGCAATTCATGCGCTACC TGGAAAACCGCGGCCTGATCGAGAAGTCCGACCGCAAGGTGTGGTGCTTCATCGGCGACGGCGAGTCGGACGAACCGGAA ACCCTCGGCGCCATCGCGCTGGCCGGCCGCGAAGGCCTGGACAACCTCATCTTCGTCGTCAACTGCAACCTGCAGCGCCT GGACGGCCCGGTGCGCGGCAACGGCAAGATCATCCAGGAACTGGAAGGCGTGTTCCGTGGCGGCGGCTGGAATGTCATCA AGCTGCTCTGGGGCGGCTACTGGGACGCCCTGCTGGCCAAGGACAGCAATGGCGTGCTGCGCAAGCTGATGATGGAAACC GTCGACGGCCAATACCAGAACTGCAAGGCCTTCGGTGGCGCCTACACCCGCGAGAATTTCTTCGGCAGGTACCCGGAGAC TGCGGCCATGGTGGCCGGCCTGTCGGACGACGACATCTGGCGCCTCAACCGTGGCGGCCACGACCCGCACAAGGTGTACG CCGCCTACCACCAGGCCGTGAACACCACCGGCATGCCCACCGTGATCCTGGCCAAGACGGTCAAGGGCTACGGCATGGGC TCGGCCGGTGAGGCGCTCAACCCCACCCACCAGACCAAGAAGCTGGACGACGCGGCGGTCAAGCACTTCCGCGACCGCTT CAACATTCCGGTCACCGACGCCCAACTGGAAGACGGCAAGGTGCCGTTCTATCACCCCGGCGACGATTCCCCGGAAGTGC AGTACCTCAAAGAGCGCCGCAACGTGCTCGGCGGTTTCCTGCCCTCGCGCCGTCCCAAGGCCAGCAAGTCCTTCGCCGCG CCCACGCTCGACAAATTCGAGCGCCTGCTCAAGGACAGCGGCGAGCGCAGCTATTCCACCACCATGTCGTTTGTGCAGAG CCTCAACATCGCCCTGCGCGACAAGGAACTGGGCCCGCGCATCGTGCCGATCGTGGCCGATGAAGCGCGCACCTTCGGCA TGGAAGGCATGTTCCGCCAGATCGGCATCTATGCCCCGTTCGGCCAGAAGTACAAGCCGGTCGACGCCGACCAGCTGATG TACTACCGCGAAGACCAGACCGGCCAGGTGCTGCAGCAGGGCATCAGCGAGCCGGGCGCGATTGCGTCCTGGATGGCCGC CGGCACCAGCTACTCGGTGTCGGATGTGCCGATGCTGCCGTTCTACATCTACTACTCCATGTTCGGCTTCCAGCGCGTGG GCGACATCGCCTGGCAGGCAGCGGACATGCGCACGCGTGGCTTCCTGCTTGGCGGCACCGCCGGCCGCACCACGCTCAAC GGCGAAGGCCTGCAGCACGAAGACGGCTTCAGCCAGCTTGTGGCCGGCGGCATCCCCAATGTGCGTAGCTACGACCCGAC CTTCGGTTTCGAAGTCACCGTCATCATGCAGCACGGCATGAAGGCGATGATGGAAGACCAGATTGACGAGTACTACTACA TCACCCTGATGAACGAGAACTACGCCCACCCCGGCATGCCGGACGGCGCCGCCGAGGGCATCATCAAGGGCATGTACCTG CTCAAGGACGCCGGCAAACCCAAGAAGGGCGAACTGCGCGTGCAGCTGCTGGGCAGCGGCACCATCCTGCGCGAGGCCAT TGCCGCGGCCGAGCTGCTGGACAAGGACTTCGGCGTTACCGCCGACATCTGGTCCTGCCCCAGCCTCAACGAAGTGCGCC GCGACGGCTACGCCGTCGAACGCTGGAACCGCCTGCACCCGGAAGCCGAACAGCGCAAGCCCTACGTCACCCAACTGCTG GAAGGCCGCCAGGGCCCGGCCATTGCCGCAACGGACTACGTGCGTGCCTTTGCTGACCAGATCCGGGCCTTCGTCCCGAT GACCTACACCGTGCTCGGTACGGATGGGTTCGGTCGCTCGGATACGCGTGCGAACCTGCGTCGGTTTTTCGAGGTCGACC GTTACTACATCGCGCACGCGGCGATTGCCGCGCTCGCTAAGGATGGGAAGATGACGGGGAAGGATGTGGCCCGGGCGATT AAGCAGTACAAGATTGATCCTGAGAAGGCGAATCCTGTTGGGGTTTGA
Upstream 100 bases:
>100_bases CCCGTAGCGAGGAATGGCAACAGGTGCGTGCGGTACACTTAGGGGTTCACGAATTCACGATGTTGACACACCCGCGGGGT GTGTCCCCCCGGGAGCGCTA
Downstream 100 bases:
>100_bases GTCGCGCCGGAACCTAAAGGTTTTGAGAAGGGCGATCATTTGGTCGCCCTTTCTCGTCGTGGGCTATTTGCTATAAATCT TAACCACGGCCTAGTGCTGC
Product: pyruvate dehydrogenase subunit E1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 895; Mature: 895
Protein sequence:
>895_residues MNWLNEVLHNDPNPLETQEWLESIKAVIDVEGPERAHQLLEGMVEQTRRAGAYLPFSPTTEYVNTIAPANEAKHPGDSAL EWKIRSIIRWNAMATVVRANRKPGDLGGHIASFASSATLYDVGFNHFWRAPSDQHPGDLLFIQGHSAPGIYARAFLEGRI SESQLDNFRMEVDGQGISSYPHPWLMPEFWQTPTVSMGLGPLAAIYQAQFMRYLENRGLIEKSDRKVWCFIGDGESDEPE TLGAIALAGREGLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGVFRGGGWNVIKLLWGGYWDALLAKDSNGVLRKLMMET VDGQYQNCKAFGGAYTRENFFGRYPETAAMVAGLSDDDIWRLNRGGHDPHKVYAAYHQAVNTTGMPTVILAKTVKGYGMG SAGEALNPTHQTKKLDDAAVKHFRDRFNIPVTDAQLEDGKVPFYHPGDDSPEVQYLKERRNVLGGFLPSRRPKASKSFAA PTLDKFERLLKDSGERSYSTTMSFVQSLNIALRDKELGPRIVPIVADEARTFGMEGMFRQIGIYAPFGQKYKPVDADQLM YYREDQTGQVLQQGISEPGAIASWMAAGTSYSVSDVPMLPFYIYYSMFGFQRVGDIAWQAADMRTRGFLLGGTAGRTTLN GEGLQHEDGFSQLVAGGIPNVRSYDPTFGFEVTVIMQHGMKAMMEDQIDEYYYITLMNENYAHPGMPDGAAEGIIKGMYL LKDAGKPKKGELRVQLLGSGTILREAIAAAELLDKDFGVTADIWSCPSLNEVRRDGYAVERWNRLHPEAEQRKPYVTQLL EGRQGPAIAATDYVRAFADQIRAFVPMTYTVLGTDGFGRSDTRANLRRFFEVDRYYIAHAAIAALAKDGKMTGKDVARAI KQYKIDPEKANPVGV
Sequences:
>Translated_895_residues MNWLNEVLHNDPNPLETQEWLESIKAVIDVEGPERAHQLLEGMVEQTRRAGAYLPFSPTTEYVNTIAPANEAKHPGDSAL EWKIRSIIRWNAMATVVRANRKPGDLGGHIASFASSATLYDVGFNHFWRAPSDQHPGDLLFIQGHSAPGIYARAFLEGRI SESQLDNFRMEVDGQGISSYPHPWLMPEFWQTPTVSMGLGPLAAIYQAQFMRYLENRGLIEKSDRKVWCFIGDGESDEPE TLGAIALAGREGLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGVFRGGGWNVIKLLWGGYWDALLAKDSNGVLRKLMMET VDGQYQNCKAFGGAYTRENFFGRYPETAAMVAGLSDDDIWRLNRGGHDPHKVYAAYHQAVNTTGMPTVILAKTVKGYGMG SAGEALNPTHQTKKLDDAAVKHFRDRFNIPVTDAQLEDGKVPFYHPGDDSPEVQYLKERRNVLGGFLPSRRPKASKSFAA PTLDKFERLLKDSGERSYSTTMSFVQSLNIALRDKELGPRIVPIVADEARTFGMEGMFRQIGIYAPFGQKYKPVDADQLM YYREDQTGQVLQQGISEPGAIASWMAAGTSYSVSDVPMLPFYIYYSMFGFQRVGDIAWQAADMRTRGFLLGGTAGRTTLN GEGLQHEDGFSQLVAGGIPNVRSYDPTFGFEVTVIMQHGMKAMMEDQIDEYYYITLMNENYAHPGMPDGAAEGIIKGMYL LKDAGKPKKGELRVQLLGSGTILREAIAAAELLDKDFGVTADIWSCPSLNEVRRDGYAVERWNRLHPEAEQRKPYVTQLL EGRQGPAIAATDYVRAFADQIRAFVPMTYTVLGTDGFGRSDTRANLRRFFEVDRYYIAHAAIAALAKDGKMTGKDVARAI KQYKIDPEKANPVGV >Mature_895_residues MNWLNEVLHNDPNPLETQEWLESIKAVIDVEGPERAHQLLEGMVEQTRRAGAYLPFSPTTEYVNTIAPANEAKHPGDSAL EWKIRSIIRWNAMATVVRANRKPGDLGGHIASFASSATLYDVGFNHFWRAPSDQHPGDLLFIQGHSAPGIYARAFLEGRI SESQLDNFRMEVDGQGISSYPHPWLMPEFWQTPTVSMGLGPLAAIYQAQFMRYLENRGLIEKSDRKVWCFIGDGESDEPE TLGAIALAGREGLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGVFRGGGWNVIKLLWGGYWDALLAKDSNGVLRKLMMET VDGQYQNCKAFGGAYTRENFFGRYPETAAMVAGLSDDDIWRLNRGGHDPHKVYAAYHQAVNTTGMPTVILAKTVKGYGMG SAGEALNPTHQTKKLDDAAVKHFRDRFNIPVTDAQLEDGKVPFYHPGDDSPEVQYLKERRNVLGGFLPSRRPKASKSFAA PTLDKFERLLKDSGERSYSTTMSFVQSLNIALRDKELGPRIVPIVADEARTFGMEGMFRQIGIYAPFGQKYKPVDADQLM YYREDQTGQVLQQGISEPGAIASWMAAGTSYSVSDVPMLPFYIYYSMFGFQRVGDIAWQAADMRTRGFLLGGTAGRTTLN GEGLQHEDGFSQLVAGGIPNVRSYDPTFGFEVTVIMQHGMKAMMEDQIDEYYYITLMNENYAHPGMPDGAAEGIIKGMYL LKDAGKPKKGELRVQLLGSGTILREAIAAAELLDKDFGVTADIWSCPSLNEVRRDGYAVERWNRLHPEAEQRKPYVTQLL EGRQGPAIAATDYVRAFADQIRAFVPMTYTVLGTDGFGRSDTRANLRRFFEVDRYYIAHAAIAALAKDGKMTGKDVARAI KQYKIDPEKANPVGV
Specific function: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components:pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydroge
COG id: COG2609
COG function: function code C; Pyruvate dehydrogenase complex, dehydrogenase (E1) component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI133778974, Length=226, Percent_Identity=31.4159292035398, Blast_Score=76, Evalue=2e-13, Organism=Escherichia coli, GI1786304, Length=892, Percent_Identity=56.390134529148, Blast_Score=1044, Evalue=0.0,
Paralogues:
None
Copy number: 1140 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 400 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004660 - InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005474 [H]
Pfam domain/function: PF00456 Transketolase_N [H]
EC number: =1.2.4.1 [H]
Molecular weight: Translated: 99601; Mature: 99601
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNWLNEVLHNDPNPLETQEWLESIKAVIDVEGPERAHQLLEGMVEQTRRAGAYLPFSPTT CCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCH EYVNTIAPANEAKHPGDSALEWKIRSIIRWNAMATVVRANRKPGDLGGHIASFASSATLY HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEE DVGFNHFWRAPSDQHPGDLLFIQGHSAPGIYARAFLEGRISESQLDNFRMEVDGQGISSY ECCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHCCEEEEECCCCCCCC PHPWLMPEFWQTPTVSMGLGPLAAIYQAQFMRYLENRGLIEKSDRKVWCFIGDGESDEPE CCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEECCCCCCCCH TLGAIALAGREGLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGVFRGGGWNVIKLLWGGY HHHHEEECCCCCCCCEEEEEECCHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCH WDALLAKDSNGVLRKLMMETVDGQYQNCKAFGGAYTRENFFGRYPETAAMVAGLSDDDIW HHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHCCCCCCHHHHHCCCCCCCEE RLNRGGHDPHKVYAAYHQAVNTTGMPTVILAKTVKGYGMGSAGEALNPTHQTKKLDDAAV ECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEHHHHCCCCCCCCCCCCCCHHHHHHHHHHH KHFRDRFNIPVTDAQLEDGKVPFYHPGDDSPEVQYLKERRNVLGGFLPSRRPKASKSFAA HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC PTLDKFERLLKDSGERSYSTTMSFVQSLNIALRDKELGPRIVPIVADEARTFGMEGMFRQ CCHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEECCCCCCEEEEEEECCHHHHCHHHHHHH IGIYAPFGQKYKPVDADQLMYYREDQTGQVLQQGISEPGAIASWMAAGTSYSVSDVPMLP HCEECCCCCCCCCCCHHHHEEEECCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCHHH FYIYYSMFGFQRVGDIAWQAADMRTRGFLLGGTAGRTTLNGEGLQHEDGFSQLVAGGIPN HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEECCCCCCCCCCHHHHHHCCCCC VRSYDPTFGFEVTVIMQHGMKAMMEDQIDEYYYITLMNENYAHPGMPDGAAEGIIKGMYL CCCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHH LKDAGKPKKGELRVQLLGSGTILREAIAAAELLDKDFGVTADIWSCPSLNEVRRDGYAVE HHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCHHH RWNRLHPEAEQRKPYVTQLLEGRQGPAIAATDYVRAFADQIRAFVPMTYTVLGTDGFGRS HHHHCCCCHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCC DTRANLRRFFEVDRYYIAHAAIAALAKDGKMTGKDVARAIKQYKIDPEKANPVGV CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MNWLNEVLHNDPNPLETQEWLESIKAVIDVEGPERAHQLLEGMVEQTRRAGAYLPFSPTT CCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCH EYVNTIAPANEAKHPGDSALEWKIRSIIRWNAMATVVRANRKPGDLGGHIASFASSATLY HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEE DVGFNHFWRAPSDQHPGDLLFIQGHSAPGIYARAFLEGRISESQLDNFRMEVDGQGISSY ECCHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHCCEEEEECCCCCCCC PHPWLMPEFWQTPTVSMGLGPLAAIYQAQFMRYLENRGLIEKSDRKVWCFIGDGESDEPE CCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEECCCCCCCCH TLGAIALAGREGLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGVFRGGGWNVIKLLWGGY HHHHEEECCCCCCCCEEEEEECCHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCH WDALLAKDSNGVLRKLMMETVDGQYQNCKAFGGAYTRENFFGRYPETAAMVAGLSDDDIW HHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHCCCCCCHHHHHCCCCCCCEE RLNRGGHDPHKVYAAYHQAVNTTGMPTVILAKTVKGYGMGSAGEALNPTHQTKKLDDAAV ECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEHHHHCCCCCCCCCCCCCCHHHHHHHHHHH KHFRDRFNIPVTDAQLEDGKVPFYHPGDDSPEVQYLKERRNVLGGFLPSRRPKASKSFAA HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC PTLDKFERLLKDSGERSYSTTMSFVQSLNIALRDKELGPRIVPIVADEARTFGMEGMFRQ CCHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEECCCCCCEEEEEEECCHHHHCHHHHHHH IGIYAPFGQKYKPVDADQLMYYREDQTGQVLQQGISEPGAIASWMAAGTSYSVSDVPMLP HCEECCCCCCCCCCCHHHHEEEECCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCHHH FYIYYSMFGFQRVGDIAWQAADMRTRGFLLGGTAGRTTLNGEGLQHEDGFSQLVAGGIPN HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEECCCCCCCCCCHHHHHHCCCCC VRSYDPTFGFEVTVIMQHGMKAMMEDQIDEYYYITLMNENYAHPGMPDGAAEGIIKGMYL CCCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHH LKDAGKPKKGELRVQLLGSGTILREAIAAAELLDKDFGVTADIWSCPSLNEVRRDGYAVE HHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCHHH RWNRLHPEAEQRKPYVTQLLEGRQGPAIAATDYVRAFADQIRAFVPMTYTVLGTDGFGRS HHHHCCCCHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCC DTRANLRRFFEVDRYYIAHAAIAALAKDGKMTGKDVARAIKQYKIDPEKANPVGV CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9171401; 10984043 [H]