Click here to switch to the map view.

The map label for this gene is trmL [H]

Identifier: 84625632

GI number: 84625632

Start: 4480789

End: 4481265

Strand: Reverse

Name: trmL [H]

Synonym: XOO_3975

Alternate gene names: 84625632

Gene position: 4481265-4480789 (Counterclockwise)

Preceding gene: 84625633

Following gene: 84625625

Centisome position: 90.71

GC content: 62.26

Gene sequence:

>477_bases
ATGTCAGCACCTGTCCTCGATGTCATCCTGTTTCAGCCCGAAATTCCGCCCAATACGGGCAATGTGATTCGCTTGTGCGC
CAATACCGGCGCGCGCCTGCACCTGATCGAGCCGCTCGGCTTCGACCTCAGCGACAAGCAGCTCAAGCGCGCCGGCCTGG
ACTATCACGAATACGCACCGCTCAAGGTGCATGTCGATTTGCCCAGCGCCCTGGCCGCAATCGCGCCCAAGCGCGTGTTT
GCATTGAGCACCCGCAGCACGGTGCGCTACGACACACCGCAGTTCGCCGATGGCGATGCATTTTTGTTCGGCCCGGAAAC
CCGCGGCCTGCCAACCGAGGTGTTGGAGTCGATTCCGCCGCAGCACCGGCTCCGTCTGCCCATGCGCCCGGACAACCGCA
GCCTCAATCTGTCCAACACCGTTGCAGTGATGGTGTTCGAAGCCTGGCGGCAATGGAATTTCGCTGGCGGCCAGTAG

Upstream 100 bases:

>100_bases
ACCTGCCGGCACCGAAGCTGCAGCCCTCGCCGGCCGAGCTGGAAGCGCTGGTCAACGCCGCCATCAGCCTTTAAGCACGC
GCGCAGCTACACTTGCGCGC

Downstream 100 bases:

>100_bases
CCGCGCTTGCACGCGACGACACACGGCGGCGGACTCGCTCCCCGGGCCTGCACTGCCACGCTTCTGTTGAGATGTTCAGT
GGGGCACGTCGACGTCTGAC

Product: tRNA/rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MSAPVLDVILFQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLSDKQLKRAGLDYHEYAPLKVHVDLPSALAAIAPKRVF
ALSTRSTVRYDTPQFADGDAFLFGPETRGLPTEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFAGGQ

Sequences:

>Translated_158_residues
MSAPVLDVILFQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLSDKQLKRAGLDYHEYAPLKVHVDLPSALAAIAPKRVF
ALSTRSTVRYDTPQFADGDAFLFGPETRGLPTEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFAGGQ
>Mature_157_residues
SAPVLDVILFQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLSDKQLKRAGLDYHEYAPLKVHVDLPSALAAIAPKRVFA
LSTRSTVRYDTPQFADGDAFLFGPETRGLPTEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFAGGQ

Specific function: Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide [H]

COG id: COG0219

COG function: function code J; Predicted rRNA methylase (SpoU class)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family. TrmL subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790034, Length=153, Percent_Identity=54.2483660130719, Blast_Score=192, Evalue=1e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004440
- InterPro:   IPR016914
- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 17571; Mature: 17440

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPVLDVILFQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLSDKQLKRAGLDYHEYAP
CCCCEEEEEEECCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCHHHHHHHCCCCHHCCC
LKVHVDLPSALAAIAPKRVFALSTRSTVRYDTPQFADGDAFLFGPETRGLPTEVLESIPP
EEEEEECCHHHHHHCCCEEEEEECCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHHCCC
QHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFAGGQ
CCEEECCCCCCCCCEECCCCEEHEEEHHHHHCCCCCCC
>Mature Secondary Structure 
SAPVLDVILFQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLSDKQLKRAGLDYHEYAP
CCCEEEEEEECCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCHHHHHHHCCCCHHCCC
LKVHVDLPSALAAIAPKRVFALSTRSTVRYDTPQFADGDAFLFGPETRGLPTEVLESIPP
EEEEEECCHHHHHHCCCEEEEEECCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHHCCC
QHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFAGGQ
CCEEECCCCCCCCCEECCCCEEHEEEHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA