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The map label for this gene is yagA [C]

Identifier: 84625013

GI number: 84625013

Start: 3823584

End: 3824069

Strand: Reverse

Name: yagA [C]

Synonym: XOO_3356

Alternate gene names: 84625013

Gene position: 3824069-3823584 (Counterclockwise)

Preceding gene: 84625014

Following gene: 84625007

Centisome position: 77.41

GC content: 62.55

Gene sequence:

>486_bases
GTGCCGCTAGGCGAGCGTGCGCCGTTGCTGCGGCCCAACAAGGCCAACCCGGTGTGGTCGATGGACGTCGTGTTCGACCG
CACCGCCGAAGGCAGGGCAATCAAATGCCTGGTGATCGTGGACGACGCAACCCACGAAGCGGTCGCCATCGACGTGGAGC
GTGCGATCTCGGGACACGGCGTTGTGCGCGTGCTGGATCGGTTGGCACACAGTCGTGGCCTGCCGAAGGTGATCCGCACC
GACAATGGTAAGGAGTTCTGTGGCAAGGCCATGGTCGCCTGGGCGCATGCCAATGGTGTGCAGCTACGCCAGATCCAGCC
TGGCAAGCCGAACCAGAATGCCTACGTCGAATCCTTCAACGGCCGGCTACGCGACGAATGCCTCAACGAACACTGGTTCC
CAACGCTGCTGCATGCGCGCACCGAGATCGAACGCTGGCGCCGCGAATACAACGAACACCGCCCCAAAAAACAATCGGCG
GAATGA

Upstream 100 bases:

>100_bases
CTCTCAAGCTGCGGCAGGAAGGGCGTCTCGTGAACTATAAGCGGGTGGAGCGGCTGTATTGCGAGCAGCAGCTGCAGGTC
CGCCGCCGCAAGCGTAAAAG

Downstream 100 bases:

>100_bases
CGCCGGCGGCCTATGCCCAGCAGTTGGCCAATAGCGAGATCATCAACCCCGGACTCTAAACCCGACTGCTACTCAGGATG
GGGGGACGTCGCGCTTGCGG

Product: ISXoo3 transposase orfB

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MPLGERAPLLRPNKANPVWSMDVVFDRTAEGRAIKCLVIVDDATHEAVAIDVERAISGHGVVRVLDRLAHSRGLPKVIRT
DNGKEFCGKAMVAWAHANGVQLRQIQPGKPNQNAYVESFNGRLRDECLNEHWFPTLLHARTEIERWRREYNEHRPKKQSA
E

Sequences:

>Translated_161_residues
MPLGERAPLLRPNKANPVWSMDVVFDRTAEGRAIKCLVIVDDATHEAVAIDVERAISGHGVVRVLDRLAHSRGLPKVIRT
DNGKEFCGKAMVAWAHANGVQLRQIQPGKPNQNAYVESFNGRLRDECLNEHWFPTLLHARTEIERWRREYNEHRPKKQSA
E
>Mature_160_residues
PLGERAPLLRPNKANPVWSMDVVFDRTAEGRAIKCLVIVDDATHEAVAIDVERAISGHGVVRVLDRLAHSRGLPKVIRTD
NGKEFCGKAMVAWAHANGVQLRQIQPGKPNQNAYVESFNGRLRDECLNEHWFPTLLHARTEIERWRREYNEHRPKKQSAE

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 18349; Mature: 18218

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLGERAPLLRPNKANPVWSMDVVFDRTAEGRAIKCLVIVDDATHEAVAIDVERAISGHG
CCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEHHHHHCCCH
VVRVLDRLAHSRGLPKVIRTDNGKEFCGKAMVAWAHANGVQLRQIQPGKPNQNAYVESFN
HHHHHHHHHHHCCCCCEEECCCCHHHHHHHHEEEECCCCEEEEEECCCCCCCCCHHECCC
GRLRDECLNEHWFPTLLHARTEIERWRREYNEHRPKKQSAE
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PLGERAPLLRPNKANPVWSMDVVFDRTAEGRAIKCLVIVDDATHEAVAIDVERAISGHG
CCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEHHHHHCCCH
VVRVLDRLAHSRGLPKVIRTDNGKEFCGKAMVAWAHANGVQLRQIQPGKPNQNAYVESFN
HHHHHHHHHHHCCCCCEEECCCCHHHHHHHHEEEECCCCEEEEEECCCCCCCCCHHECCC
GRLRDECLNEHWFPTLLHARTEIERWRREYNEHRPKKQSAE
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]