| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is 84624811
Identifier: 84624811
GI number: 84624811
Start: 3576141
End: 3577364
Strand: Reverse
Name: 84624811
Synonym: XOO_3154
Alternate gene names: NA
Gene position: 3577364-3576141 (Counterclockwise)
Preceding gene: 84624813
Following gene: 84624810
Centisome position: 72.41
GC content: 62.91
Gene sequence:
>1224_bases GTGCCAACCATGCGCGCCAGCGAAGTATTGCAGAAGTGCCTGTCTAACTCACTCTCCGGGATGCATGCATTACGCCAACG CGCCTTGCTACGCGCGGTTGAAGCGCTGGTGCACGGAGGCCGGCTGACGCTGATCGACATCGCACGCGCGTGGCCCGGCG CGAGGCGGGTACGTGCGCCCCTCAAGGCATGCGACCGCCTGCTGTGCAATCGCGCGTTGCAGGTCGAGCGATCAGCCATC GAGCGGGACATGGCGCATTGGCTACTGCGCGGCGACCAGCCGGTGATCGTCATCGACTGGAGCGATTTGAAGCCGGACAA GTCGTGGTGTCTGCTGCGCGCAGCCGTGCCGGTCGGTGGACGCACGCTCACCTTGCTGGATATGGTGGTTTCCGGGAAAC AGCAGGGATCGCCAGGCGCGGAGAAACGCTTTTTGCAGCAGCTCAGGGCACTGATTCCAGACGATGTGCGTCCGATCCTG GTCACGGATGCCGGATTCCGCACGCCATGGTTTCGCGCGGTGTCGGCGATGGGCTGGGATTGGGTCGGACGTCTGCGCGG ACGTACGCAGGTCAAACCGCAAGACGTGCCCGATGATGCAGTGCAATGGATCGATAGCCGTCGCCTGCATGCGCTAGCGT CCAACCGTGCACGCGAATTGCCACCGATGCAGGCCAATCGCAGCGATCCGCTCGATTGCCGTCTGGTGCTCTATGCCAAG ACACCACAGGGACGTCAGCAACGCAATCGACGCTCACCCGCCAAAGTCTCGGGTGCATCATCCAGTTTGAAAGCCGCAGC GCGTGAGCGTGAGCCGTGGTTGATCGTTGCCTCCCCACAGCTACACGCACCCAGCGCAAAGCAATTGGTCAACCTGTACG CACGACGGATGCAGATCGAGCTGGCATTTCGTGATCTGAAGTCGCACCGCTACGGTCAGGCGATGGAAGACAGCCTGACC CGTCGCGGCGAGCGGTTGCAGATCCTGTTGTTGCTCAACACGCTGGCCACCTTCGCCAGTTGGCTGGCGGGACTGGGATG CGAAGCCACCGGTATCGCCCAGTGGCTATCTCCACGCAGCAGCACACGCAAACTCTACTCGACGCTGCGCGTCGGCCGCG AGGCGCTGGTCAGGTGCTGGCCGATGGAACCAGTCTCACGCTGGCTAGAACGCTTGCGCGCGCTGCCCGACGCAGTGCGC GAGCAGATGACATTGGTGCTTTAA
Upstream 100 bases:
>100_bases TCCCCACATTTCTTCCTGCGAGATCAAGCACTTGTTGCATCAAGGCGTGGAAGAAGGCGCGCGCATGGGGCACGCTTCGA GGTGACTAAGCCAGAGAAGA
Downstream 100 bases:
>100_bases AAACGTGGGATATCTAATTCCACTGTGTTACAAATAATCGTACCTTTGTGCCACTATTGGAAGACCTTCAGGCCGCGCGG GAGAGCTGTGTTGAATAGGA
Product: ISXoo8 transposase
Products: NA
Alternate protein names: ISxac1 Transposase; Transposase; Transposase For IS; IS10 Orf; ISCro2 Transposase; Transposase IS; ISXoo8 Transposase; IS4 Family Transposase; ISSfl3 ORF
Number of amino acids: Translated: 407; Mature: 406
Protein sequence:
>407_residues MPTMRASEVLQKCLSNSLSGMHALRQRALLRAVEALVHGGRLTLIDIARAWPGARRVRAPLKACDRLLCNRALQVERSAI ERDMAHWLLRGDQPVIVIDWSDLKPDKSWCLLRAAVPVGGRTLTLLDMVVSGKQQGSPGAEKRFLQQLRALIPDDVRPIL VTDAGFRTPWFRAVSAMGWDWVGRLRGRTQVKPQDVPDDAVQWIDSRRLHALASNRARELPPMQANRSDPLDCRLVLYAK TPQGRQQRNRRSPAKVSGASSSLKAAAREREPWLIVASPQLHAPSAKQLVNLYARRMQIELAFRDLKSHRYGQAMEDSLT RRGERLQILLLLNTLATFASWLAGLGCEATGIAQWLSPRSSTRKLYSTLRVGREALVRCWPMEPVSRWLERLRALPDAVR EQMTLVL
Sequences:
>Translated_407_residues MPTMRASEVLQKCLSNSLSGMHALRQRALLRAVEALVHGGRLTLIDIARAWPGARRVRAPLKACDRLLCNRALQVERSAI ERDMAHWLLRGDQPVIVIDWSDLKPDKSWCLLRAAVPVGGRTLTLLDMVVSGKQQGSPGAEKRFLQQLRALIPDDVRPIL VTDAGFRTPWFRAVSAMGWDWVGRLRGRTQVKPQDVPDDAVQWIDSRRLHALASNRARELPPMQANRSDPLDCRLVLYAK TPQGRQQRNRRSPAKVSGASSSLKAAAREREPWLIVASPQLHAPSAKQLVNLYARRMQIELAFRDLKSHRYGQAMEDSLT RRGERLQILLLLNTLATFASWLAGLGCEATGIAQWLSPRSSTRKLYSTLRVGREALVRCWPMEPVSRWLERLRALPDAVR EQMTLVL >Mature_406_residues PTMRASEVLQKCLSNSLSGMHALRQRALLRAVEALVHGGRLTLIDIARAWPGARRVRAPLKACDRLLCNRALQVERSAIE RDMAHWLLRGDQPVIVIDWSDLKPDKSWCLLRAAVPVGGRTLTLLDMVVSGKQQGSPGAEKRFLQQLRALIPDDVRPILV TDAGFRTPWFRAVSAMGWDWVGRLRGRTQVKPQDVPDDAVQWIDSRRLHALASNRARELPPMQANRSDPLDCRLVLYAKT PQGRQQRNRRSPAKVSGASSSLKAAAREREPWLIVASPQLHAPSAKQLVNLYARRMQIELAFRDLKSHRYGQAMEDSLTR RGERLQILLLLNTLATFASWLAGLGCEATGIAQWLSPRSSTRKLYSTLRVGREALVRCWPMEPVSRWLERLRALPDAVRE QMTLVL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45928; Mature: 45797
Theoretical pI: Translated: 11.54; Mature: 11.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTMRASEVLQKCLSNSLSGMHALRQRALLRAVEALVHGGRLTLIDIARAWPGARRVRAP CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCHHHHHHH LKACDRLLCNRALQVERSAIERDMAHWLLRGDQPVIVIDWSDLKPDKSWCLLRAAVPVGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHEEEEEECCCCC RTLTLLDMVVSGKQQGSPGAEKRFLQQLRALIPDDVRPILVTDAGFRTPWFRAVSAMGWD CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHCCHH WVGRLRGRTQVKPQDVPDDAVQWIDSRRLHALASNRARELPPMQANRSDPLDCRLVLYAK HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEC TPQGRQQRNRRSPAKVSGASSSLKAAAREREPWLIVASPQLHAPSAKQLVNLYARRMQIE CCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH LAFRDLKSHRYGQAMEDSLTRRGERLQILLLLNTLATFASWLAGLGCEATGIAQWLSPRS HHHHHHHHHHCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH STRKLYSTLRVGREALVRCWPMEPVSRWLERLRALPDAVREQMTLVL HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PTMRASEVLQKCLSNSLSGMHALRQRALLRAVEALVHGGRLTLIDIARAWPGARRVRAP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCHHHHHHH LKACDRLLCNRALQVERSAIERDMAHWLLRGDQPVIVIDWSDLKPDKSWCLLRAAVPVGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHEEEEEECCCCC RTLTLLDMVVSGKQQGSPGAEKRFLQQLRALIPDDVRPILVTDAGFRTPWFRAVSAMGWD CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHCCHH WVGRLRGRTQVKPQDVPDDAVQWIDSRRLHALASNRARELPPMQANRSDPLDCRLVLYAK HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEC TPQGRQQRNRRSPAKVSGASSSLKAAAREREPWLIVASPQLHAPSAKQLVNLYARRMQIE CCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH LAFRDLKSHRYGQAMEDSLTRRGERLQILLLLNTLATFASWLAGLGCEATGIAQWLSPRS HHHHHHHHHHCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH STRKLYSTLRVGREALVRCWPMEPVSRWLERLRALPDAVREQMTLVL HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA