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The map label for this gene is nodD [H]

Identifier: 84624542

GI number: 84624542

Start: 3257058

End: 3258038

Strand: Direct

Name: nodD [H]

Synonym: XOO_2885

Alternate gene names: 84624542

Gene position: 3257058-3258038 (Clockwise)

Preceding gene: 84624541

Following gene: 84624543

Centisome position: 65.93

GC content: 66.16

Gene sequence:

>981_bases
ATGAATATCCGACCAAGCGACTTACCTCTTCTGGTGTCCCTCGACGCATTGCTTGAGCTGAAGAACGTCACCCATGCCGC
GCAGCGATTGCATATGAGCCAGCCGGCACTGTCCTCGCAACTCGCACGACTCCGCGTGCTGTTCAAGGATCCGTTGTTGA
TGCCATCGGACACCGGCCGCGGCATGGTGGCCACGCCACGCGCGGATCAACTGGCTTCGCCGCTGCGCGAAGCGATCGGC
AAACTGAGCCTGCTCGGCAAGGACAGCGCGTTCGATCCAGCGACGTCGTCGGCGAGCTTCCGGATCGCAGCCGCTGCCGA
TGCGATCGGCACCTTGGGTGCGGGATTGGCAGGGTTGATCCAGGCCCAGGGCAATCGAAAGATGCGTTTGGAGTTCGTGC
ATGTGAGTTCCGACACGCGCCTGGACGCGTTCGAAAACGGCGAGCTGGATCTGCTGATCGATCACGCGCAAGCGGTTCCC
GACGCGCTGCGCTTGCGCCGTTTACGCGACGAACGCTACGTGCTGGTGCAGCGCCGTGGCCATCCGCGCGGTACCGCGGC
GCTGAGCGCAGCGAGCTACAGCCGTCTGGCGCATGTGCAGGTCGCGCACGCACAGGCCTGCAACCTCGCCATCGATGCGC
AACTGCGGCATCTGGGGCACACCCGGCAGATCGCGGTGACCGTCTCGCAGTGCGCCACCGCGCGCGACATCGTACTGGGC
ACCGACATGGTCGCCACCATGCCGGCAACGCTTGCGGCAGAGCGCGGGCATGCACCGCTGGACTGCTTCGAACTGCCTTT
CCCGCTGCCGGACATGGCGCTGGCGATGGCCTGGCATCGACGCAACGATGCCCATGCCGCACATCGCTGGTTGCGCGAGC
GTGTGCTGGACCTGCTTGTTCCGGCAGCGCCGGCCGCAGCGGTGCCGGCCGCGGCGCGACGCACCGCCGGCCGTGCCGAT
CTCGTGCTATCCGTTTCGTGA

Upstream 100 bases:

>100_bases
GTCGCCGCAGATCGACACCGGAACGTAGCGCGGGCTGCCTAGCCTAGTGGATGCCCAGGCGCAGTAAGCCGCCTGCATTC
CACGACGAGCGATCCACGAC

Downstream 100 bases:

>100_bases
GCCGCGCCATGCAGATCGACAACGCACCGTTGCTGCGACCGGTCGACGAACAGGTGCCATCCGGTCCGAACCTGGAATAC
ACCCCGGAGTTCCAGAGCCT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MNIRPSDLPLLVSLDALLELKNVTHAAQRLHMSQPALSSQLARLRVLFKDPLLMPSDTGRGMVATPRADQLASPLREAIG
KLSLLGKDSAFDPATSSASFRIAAAADAIGTLGAGLAGLIQAQGNRKMRLEFVHVSSDTRLDAFENGELDLLIDHAQAVP
DALRLRRLRDERYVLVQRRGHPRGTAALSAASYSRLAHVQVAHAQACNLAIDAQLRHLGHTRQIAVTVSQCATARDIVLG
TDMVATMPATLAAERGHAPLDCFELPFPLPDMALAMAWHRRNDAHAAHRWLRERVLDLLVPAAPAAAVPAAARRTAGRAD
LVLSVS

Sequences:

>Translated_326_residues
MNIRPSDLPLLVSLDALLELKNVTHAAQRLHMSQPALSSQLARLRVLFKDPLLMPSDTGRGMVATPRADQLASPLREAIG
KLSLLGKDSAFDPATSSASFRIAAAADAIGTLGAGLAGLIQAQGNRKMRLEFVHVSSDTRLDAFENGELDLLIDHAQAVP
DALRLRRLRDERYVLVQRRGHPRGTAALSAASYSRLAHVQVAHAQACNLAIDAQLRHLGHTRQIAVTVSQCATARDIVLG
TDMVATMPATLAAERGHAPLDCFELPFPLPDMALAMAWHRRNDAHAAHRWLRERVLDLLVPAAPAAAVPAAARRTAGRAD
LVLSVS
>Mature_326_residues
MNIRPSDLPLLVSLDALLELKNVTHAAQRLHMSQPALSSQLARLRVLFKDPLLMPSDTGRGMVATPRADQLASPLREAIG
KLSLLGKDSAFDPATSSASFRIAAAADAIGTLGAGLAGLIQAQGNRKMRLEFVHVSSDTRLDAFENGELDLLIDHAQAVP
DALRLRRLRDERYVLVQRRGHPRGTAALSAASYSRLAHVQVAHAQACNLAIDAQLRHLGHTRQIAVTVSQCATARDIVLG
TDMVATMPATLAAERGHAPLDCFELPFPLPDMALAMAWHRRNDAHAAHRWLRERVLDLLVPAAPAAAVPAAARRTAGRAD
LVLSVS

Specific function: NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=316, Percent_Identity=27.2151898734177, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1790147, Length=303, Percent_Identity=23.7623762376238, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35077; Mature: 35077

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRPSDLPLLVSLDALLELKNVTHAAQRLHMSQPALSSQLARLRVLFKDPLLMPSDTGR
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
GMVATPRADQLASPLREAIGKLSLLGKDSAFDPATSSASFRIAAAADAIGTLGAGLAGLI
CEEECCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHH
QAQGNRKMRLEFVHVSSDTRLDAFENGELDLLIDHAQAVPDALRLRRLRDERYVLVQRRG
HCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECHHHCHHHHHHHHHCCCCEEEEEECC
HPRGTAALSAASYSRLAHVQVAHAQACNLAIDAQLRHLGHTRQIAVTVSQCATARDIVLG
CCCCHHHHHHHHHHHHHHEEEHHHHHCCEEEHHHHHHCCCCEEEEEEHHHHCCHHHEEEC
TDMVATMPATLAAERGHAPLDCFELPFPLPDMALAMAWHRRNDAHAAHRWLRERVLDLLV
CCHHHHCCHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
PAAPAAAVPAAARRTAGRADLVLSVS
CCCCHHHCCHHHHHCCCCCCEEEEEC
>Mature Secondary Structure
MNIRPSDLPLLVSLDALLELKNVTHAAQRLHMSQPALSSQLARLRVLFKDPLLMPSDTGR
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
GMVATPRADQLASPLREAIGKLSLLGKDSAFDPATSSASFRIAAAADAIGTLGAGLAGLI
CEEECCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHH
QAQGNRKMRLEFVHVSSDTRLDAFENGELDLLIDHAQAVPDALRLRRLRDERYVLVQRRG
HCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECHHHCHHHHHHHHHCCCCEEEEEECC
HPRGTAALSAASYSRLAHVQVAHAQACNLAIDAQLRHLGHTRQIAVTVSQCATARDIVLG
CCCCHHHHHHHHHHHHHHEEEHHHHHCCEEEHHHHHHCCCCEEEEEEHHHHCCHHHEEEC
TDMVATMPATLAAERGHAPLDCFELPFPLPDMALAMAWHRRNDAHAAHRWLRERVLDLLV
CCHHHHCCHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
PAAPAAAVPAAARRTAGRADLVLSVS
CCCCHHHCCHHHHHCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3960737 [H]