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The map label for this gene is yodB [H]

Identifier: 84624507

GI number: 84624507

Start: 3201951

End: 3202571

Strand: Direct

Name: yodB [H]

Synonym: XOO_2850

Alternate gene names: 84624507

Gene position: 3201951-3202571 (Clockwise)

Preceding gene: 84624492

Following gene: 84624508

Centisome position: 64.81

GC content: 68.92

Gene sequence:

>621_bases
ATGCGTTCATCCCCCCAGGCGCCCGCCAGCGCTCCCGTCCACGGCAAAGACACGGTGCCACTGGTGGAACAGGCGCCCGC
AGCCGCGCGTGTGCTGCCCTTACCCAAAGCGATGCGCGTGCTGCACTGGCTCACCGTGCTGTGCCTGATCATGGCGGCCA
CGCTGATCCTGCTGCGCGCCGAACTGGATGGCCGCGCATTGCGTCAGTGGCTGCTGGAAGGCCACCGCCACTTCGGCCTG
CTGGTGCTGCTGCTGTTCGCACTGCGCATCGGGTTGCGCCTGCGTCTGCGCACGCTGCCGCCAGGCCCTCCCGCGTCGCT
GCCGATGCGTCTGGCCGCTGGCGCCACGCATGTGGCGATGTACGGATTGATGCTTGCGCTGCCGCTGCTGGGCTGGTCGC
TGAGCAGCGCCTACGGCAAGCAGGTGTATTTCTTCGGCATCCCCTTGCCCGGGCTGGTCGCGCCGGACGGCGACCTCGGC
GACACCCTGGGCACATGGCACTTGAATGCCGCATGGGCGTTGCTGGCGCTGGTGCTGCTGCACATCGGCGCCGCGCTCTG
GCATCACCTGGTGTTGCGCGACGGCCTACTGCGCCGCGTGTTGCCGGGCAAACGCGCATGA

Upstream 100 bases:

>100_bases
GTGCACGTTCACCTGGCCGCCGTTCGGCCGGCGTGGGGAGCCAGGCCTGGCAGCACAGCGCGCTGCCGGAACCAACGACC
ACCACCGGAAGACAGATCAG

Downstream 100 bases:

>100_bases
ACCGCCGCCCCCCGCCGTCTGTCATTGGTTTCCTCGCCCGTTCCCGCACCGCTGCCTCCCGCACCGTCGAACAAGGACTT
TCCATGCCCATGTCCCAGCC

Product: cytochrome like B561

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MRSSPQAPASAPVHGKDTVPLVEQAPAAARVLPLPKAMRVLHWLTVLCLIMAATLILLRAELDGRALRQWLLEGHRHFGL
LVLLLFALRIGLRLRLRTLPPGPPASLPMRLAAGATHVAMYGLMLALPLLGWSLSSAYGKQVYFFGIPLPGLVAPDGDLG
DTLGTWHLNAAWALLALVLLHIGAALWHHLVLRDGLLRRVLPGKRA

Sequences:

>Translated_206_residues
MRSSPQAPASAPVHGKDTVPLVEQAPAAARVLPLPKAMRVLHWLTVLCLIMAATLILLRAELDGRALRQWLLEGHRHFGL
LVLLLFALRIGLRLRLRTLPPGPPASLPMRLAAGATHVAMYGLMLALPLLGWSLSSAYGKQVYFFGIPLPGLVAPDGDLG
DTLGTWHLNAAWALLALVLLHIGAALWHHLVLRDGLLRRVLPGKRA
>Mature_206_residues
MRSSPQAPASAPVHGKDTVPLVEQAPAAARVLPLPKAMRVLHWLTVLCLIMAATLILLRAELDGRALRQWLLEGHRHFGL
LVLLLFALRIGLRLRLRTLPPGPPASLPMRLAAGATHVAMYGLMLALPLLGWSLSSAYGKQVYFFGIPLPGLVAPDGDLG
DTLGTWHLNAAWALLALVLLHIGAALWHHLVLRDGLLRRVLPGKRA

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b561 family [H]

Homologues:

Organism=Escherichia coli, GI87082013, Length=177, Percent_Identity=30.5084745762712, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787296, Length=137, Percent_Identity=36.4963503649635, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 22326; Mature: 22326

Theoretical pI: Translated: 11.76; Mature: 11.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSSPQAPASAPVHGKDTVPLVEQAPAAARVLPLPKAMRVLHWLTVLCLIMAATLILLRA
CCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ELDGRALRQWLLEGHRHFGLLVLLLFALRIGLRLRLRTLPPGPPASLPMRLAAGATHVAM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEECCCCCCCCCCHHHHHCHHHHHH
YGLMLALPLLGWSLSSAYGKQVYFFGIPLPGLVAPDGDLGDTLGTWHLNAAWALLALVLL
HHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
HIGAALWHHLVLRDGLLRRVLPGKRA
HHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRSSPQAPASAPVHGKDTVPLVEQAPAAARVLPLPKAMRVLHWLTVLCLIMAATLILLRA
CCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ELDGRALRQWLLEGHRHFGLLVLLLFALRIGLRLRLRTLPPGPPASLPMRLAAGATHVAM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEECCCCCCCCCCHHHHHCHHHHHH
YGLMLALPLLGWSLSSAYGKQVYFFGIPLPGLVAPDGDLGDTLGTWHLNAAWALLALVLL
HHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
HIGAALWHHLVLRDGLLRRVLPGKRA
HHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]