| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is tar [H]
Identifier: 84624368
GI number: 84624368
Start: 3054124
End: 3056523
Strand: Direct
Name: tar [H]
Synonym: XOO_2711
Alternate gene names: 84624368
Gene position: 3054124-3056523 (Clockwise)
Preceding gene: 84624367
Following gene: 84624369
Centisome position: 61.82
GC content: 63.33
Gene sequence:
>2400_bases GTGTCAATGCAATGGATCAACAATCTGAAATTGATGCCCAAGCTGATGCTGGCGTTCGGCATCGTGCTGCTGATCATGCT CGTCCAGGGCATCATCGCCTATTCGGGCCTGGCCTCGCTCAATAACGTCACCCGCGATCTGGCCGGCAATACCATGTCCA GCGTGCGCGAGGCAGGCGATCTGCGCGGTATGCTCGGCGAATACCGCAACGCGGCTTACCAGAACCTGGTGCGCGCCAGC GATTCGGTCAAGCAGGAAGCCAAGGTTCGCTCCAACAAGCTCAACGGCAAGATCGAAGCCACCATCAAGGGCTACCCGCG CCTGATCGAGAGCCCGCAGCAGAAGAAGCTGTTCGACGTGTTCGTGGCCGACTGGAAGAAGGCTTCGGCCTCCTACGCCA GCGTCGCTGAAATGATCGAACTCAATCTGCCCGACGATGCCGTCGACACCTTCGTCGGTGAAACCCGCACCCTGCACAAC AAGGCCAAGGATTCGCTGGCTGCGTTGATCGCCGAAGACAACATGCTCGCGCAGGCTGCCAAGACCAAGGCCGAAAAGGT CCACGCCACCTCCGTCTCGCTGACCGTGATGGTGCTGCTGATCGGCATTGCCGGCGGCCTGGGCCTGGCGTTCCTGTTTG CCCGTTCCATCGTCAAGAGCATGCGCGGCGCGGTCACCGCCGCCACCGAAATCGCCGGCGGCAAGCTGGACGGCCAGATC AACGTGCAGGGCCAGGACGAAGTGGGCGAATTGATGCGCTCCATGCAGCGCATGCAGCGCATGCAGCGCGACCTGAAAGA GCGCATCGAACGCGACCAGAGGATTGCCGACGAAAACCTGCGCATTCGTACTGCGTTGGACACGTCCTCGACCGGCACCT TCATCACCGATCCCGAGCGCGTCATGATTTACGCCAACGACGCCTTCAAGAAGATCGTGGCGCAGTACGAAAGCAGCATC CGCCTGGCATCGCCCGAATTCGACGCCAGCAAGGTCATCGGCCAGCACATCAGCTACCTGGGTCTGTCGGATGCGACCGT GCGCAAGGCCATTGCCGCATTGGAACGCGTTGGTGTCACCAGCTTCGAAGAGCGCTTCGGCGAAGTGGTGCTGGCACAGA CAGTCACCGCCATCAAGAACGAACAGTGCGAGACCAGCGGCGAAGTCTGCGAATGGCGCGACCGCACCATCGAAGTCCAG GTCGAAGAAGAAGTTGCGCGTATCGTGCGTGACGCTGCCAGCGGCGACATGAGCGGCAGCGTGGAAACCGACGGCAAGCA GGGTTTCTTCCTGCAGCTGGCGCAGCAGCTCAACGGCTTGCTGGATGCCAATGCCGGCAGCCTGGAGCATATCTCGGCCC TGTTGTCCGCGCTGTCGCGTGGCGACCTGACCGTGCGCATGCATGGCGAGTTCAGCGGCGTGTTCGCGCAGATGCGTGAC GATGCCAATGCCACCGCCGAGCAGCTGGCCGACATCGTTGGCCACATCAAGCTGTCGTCCGGTGCGATCAACGCAGCCGC TGGCGAAATTGCTTCGGGCAACAGCGACCTGTCGCATCGCACCGAGCAGCAGGCCGCCAACCTGGAAGAAACCGCCGCCT CGATGGAGGAGCTCACCTCCACCGTCAAGCAGAACGCCGAGAGCGCCCGTCAGGCCAACCAGCTTGCCATCGGCGCCACC GGCGTGGCCTCGCAAGGCGGTGAAGTGGTGTCGCAGGTGGTCACCACCATGTCCGGCATCGAAGCCTCGTCCAGGAAGAT CGCCGACATCATCAGCGTCATCGATGGCATCGCGTTCCAGACCAATATCTTGGCGCTGAATGCAGCGGTGGAAGCGACAC GTGCCGGCGAGCAGGGTCGCGGCTTTGCCGTGGTCGCCTCCGAAGTGCGTACGCTGGCACAGCGTTCGGCCGGTGCGGCT AAGGAGATCAAGGGGTTGATCGACGATTCCGTGCACAAGGTGGCCGAAGGCTCGGCACTGGTCCGCAAGGCCGGTGCCAC CATGGCCGAGATCGTGGCCAGCGTGCAGCGCGTGACCGACATCATGGGGGAGATTTCTGCGGCTTCGCAGGAGCAGTCGT CCGGGATCGAGCAGGTCAACCAGACCATCACCCAGATGGACGAAACCACCCAGCAGAATGCTGCGCTGGTGGAAGAAGCC ACCGCCGCCGCCCGTTCGATGGAAGAGCAGGCCGGTCACCTGGCCGAAGCGGTGTCGGTGTTCAAACTGGACGAATCGGC TGCGCCGGTTGCGCAGACCGCACGCGTGCGGCCGATCGCCTCGCGCCCGGTTGCAGTGAAAGGCGCCGCCGCCAAGCCGC TAGCGCGGGCAGCGGCCACCGCGGCGCGGCCTGCCACATCCCAGGCCGCGTTGGCCGACGGTCACTGGCAAGAGTTCTGA
Upstream 100 bases:
>100_bases GAAGCTCGCCACCATCAAGTAAGCGCCTCGCACATCGCCACGCCCCCGCGCGTGGCGATGTGCTGTTGCGGCCATGCGAA CTGACGTCCACGGGGGAATC
Downstream 100 bases:
>100_bases TTCACCGCTGTCACCCACAACGCCCCGGCACGGCCGGGGCGTTGTGCATCTGGGCACTGCATCTGCGTTGATCACCGCGC GCACAGTGCTGCGGAATGCC
Product: chemotaxis protein
Products: NA
Alternate protein names: MCP-II; Aspartate chemoreceptor protein [H]
Number of amino acids: Translated: 799; Mature: 798
Protein sequence:
>799_residues MSMQWINNLKLMPKLMLAFGIVLLIMLVQGIIAYSGLASLNNVTRDLAGNTMSSVREAGDLRGMLGEYRNAAYQNLVRAS DSVKQEAKVRSNKLNGKIEATIKGYPRLIESPQQKKLFDVFVADWKKASASYASVAEMIELNLPDDAVDTFVGETRTLHN KAKDSLAALIAEDNMLAQAAKTKAEKVHATSVSLTVMVLLIGIAGGLGLAFLFARSIVKSMRGAVTAATEIAGGKLDGQI NVQGQDEVGELMRSMQRMQRMQRDLKERIERDQRIADENLRIRTALDTSSTGTFITDPERVMIYANDAFKKIVAQYESSI RLASPEFDASKVIGQHISYLGLSDATVRKAIAALERVGVTSFEERFGEVVLAQTVTAIKNEQCETSGEVCEWRDRTIEVQ VEEEVARIVRDAASGDMSGSVETDGKQGFFLQLAQQLNGLLDANAGSLEHISALLSALSRGDLTVRMHGEFSGVFAQMRD DANATAEQLADIVGHIKLSSGAINAAAGEIASGNSDLSHRTEQQAANLEETAASMEELTSTVKQNAESARQANQLAIGAT GVASQGGEVVSQVVTTMSGIEASSRKIADIISVIDGIAFQTNILALNAAVEATRAGEQGRGFAVVASEVRTLAQRSAGAA KEIKGLIDDSVHKVAEGSALVRKAGATMAEIVASVQRVTDIMGEISAASQEQSSGIEQVNQTITQMDETTQQNAALVEEA TAAARSMEEQAGHLAEAVSVFKLDESAAPVAQTARVRPIASRPVAVKGAAAKPLARAAATAARPATSQAALADGHWQEF
Sequences:
>Translated_799_residues MSMQWINNLKLMPKLMLAFGIVLLIMLVQGIIAYSGLASLNNVTRDLAGNTMSSVREAGDLRGMLGEYRNAAYQNLVRAS DSVKQEAKVRSNKLNGKIEATIKGYPRLIESPQQKKLFDVFVADWKKASASYASVAEMIELNLPDDAVDTFVGETRTLHN KAKDSLAALIAEDNMLAQAAKTKAEKVHATSVSLTVMVLLIGIAGGLGLAFLFARSIVKSMRGAVTAATEIAGGKLDGQI NVQGQDEVGELMRSMQRMQRMQRDLKERIERDQRIADENLRIRTALDTSSTGTFITDPERVMIYANDAFKKIVAQYESSI RLASPEFDASKVIGQHISYLGLSDATVRKAIAALERVGVTSFEERFGEVVLAQTVTAIKNEQCETSGEVCEWRDRTIEVQ VEEEVARIVRDAASGDMSGSVETDGKQGFFLQLAQQLNGLLDANAGSLEHISALLSALSRGDLTVRMHGEFSGVFAQMRD DANATAEQLADIVGHIKLSSGAINAAAGEIASGNSDLSHRTEQQAANLEETAASMEELTSTVKQNAESARQANQLAIGAT GVASQGGEVVSQVVTTMSGIEASSRKIADIISVIDGIAFQTNILALNAAVEATRAGEQGRGFAVVASEVRTLAQRSAGAA KEIKGLIDDSVHKVAEGSALVRKAGATMAEIVASVQRVTDIMGEISAASQEQSSGIEQVNQTITQMDETTQQNAALVEEA TAAARSMEEQAGHLAEAVSVFKLDESAAPVAQTARVRPIASRPVAVKGAAAKPLARAAATAARPATSQAALADGHWQEF >Mature_798_residues SMQWINNLKLMPKLMLAFGIVLLIMLVQGIIAYSGLASLNNVTRDLAGNTMSSVREAGDLRGMLGEYRNAAYQNLVRASD SVKQEAKVRSNKLNGKIEATIKGYPRLIESPQQKKLFDVFVADWKKASASYASVAEMIELNLPDDAVDTFVGETRTLHNK AKDSLAALIAEDNMLAQAAKTKAEKVHATSVSLTVMVLLIGIAGGLGLAFLFARSIVKSMRGAVTAATEIAGGKLDGQIN VQGQDEVGELMRSMQRMQRMQRDLKERIERDQRIADENLRIRTALDTSSTGTFITDPERVMIYANDAFKKIVAQYESSIR LASPEFDASKVIGQHISYLGLSDATVRKAIAALERVGVTSFEERFGEVVLAQTVTAIKNEQCETSGEVCEWRDRTIEVQV EEEVARIVRDAASGDMSGSVETDGKQGFFLQLAQQLNGLLDANAGSLEHISALLSALSRGDLTVRMHGEFSGVFAQMRDD ANATAEQLADIVGHIKLSSGAINAAAGEIASGNSDLSHRTEQQAANLEETAASMEELTSTVKQNAESARQANQLAIGATG VASQGGEVVSQVVTTMSGIEASSRKIADIISVIDGIAFQTNILALNAAVEATRAGEQGRGFAVVASEVRTLAQRSAGAAK EIKGLIDDSVHKVAEGSALVRKAGATMAEIVASVQRVTDIMGEISAASQEQSSGIEQVNQTITQMDETTQQNAALVEEAT AAARSMEEQAGHLAEAVSVFKLDESAAPVAQTARVRPIASRPVAVKGAAAKPLARAAATAARPATSQAALADGHWQEF
Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of
COG id: COG0840
COG function: function code NT; Methyl-accepting chemotaxis protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 methyl-accepting transducer domain [H]
Homologues:
Organism=Escherichia coli, GI2367378, Length=340, Percent_Identity=57.0588235294118, Blast_Score=302, Evalue=5e-83, Organism=Escherichia coli, GI1788195, Length=319, Percent_Identity=57.6802507836991, Blast_Score=300, Evalue=2e-82, Organism=Escherichia coli, GI1788194, Length=278, Percent_Identity=59.3525179856115, Blast_Score=292, Evalue=5e-80, Organism=Escherichia coli, GI1787690, Length=307, Percent_Identity=55.700325732899, Blast_Score=281, Evalue=1e-76, Organism=Escherichia coli, GI1789453, Length=232, Percent_Identity=46.551724137931, Blast_Score=199, Evalue=5e-52,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004090 - InterPro: IPR003122 - InterPro: IPR004091 - InterPro: IPR004089 - InterPro: IPR003660 [H]
Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF02203 TarH [H]
EC number: NA
Molecular weight: Translated: 85078; Mature: 84947
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMQWINNLKLMPKLMLAFGIVLLIMLVQGIIAYSGLASLNNVTRDLAGNTMSSVREAGD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH LRGMLGEYRNAAYQNLVRASDSVKQEAKVRSNKLNGKIEATIKGYPRLIESPQQKKLFDV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCHHHHHHHH FVADWKKASASYASVAEMIELNLPDDAVDTFVGETRTLHNKAKDSLAALIAEDNMLAQAA HHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHH KTKAEKVHATSVSLTVMVLLIGIAGGLGLAFLFARSIVKSMRGAVTAATEIAGGKLDGQI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE NVQGQDEVGELMRSMQRMQRMQRDLKERIERDQRIADENLRIRTALDTSSTGTFITDPER EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEECCCE VMIYANDAFKKIVAQYESSIRLASPEFDASKVIGQHISYLGLSDATVRKAIAALERVGVT EEEEECHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC SFEERFGEVVLAQTVTAIKNEQCETSGEVCEWRDRTIEVQVEEEVARIVRDAASGDMSGS HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEEEEEHHHHHHHHHHHCCCCCCCC VETDGKQGFFLQLAQQLNGLLDANAGSLEHISALLSALSRGDLTVRMHGEFSGVFAQMRD CCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHC DANATAEQLADIVGHIKLSSGAINAAAGEIASGNSDLSHRTEQQAANLEETAASMEELTS CCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH TVKQNAESARQANQLAIGATGVASQGGEVVSQVVTTMSGIEASSRKIADIISVIDGIAFQ HHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHH TNILALNAAVEATRAGEQGRGFAVVASEVRTLAQRSAGAAKEIKGLIDDSVHKVAEGSAL HHHEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHH VRKAGATMAEIVASVQRVTDIMGEISAASQEQSSGIEQVNQTITQMDETTQQNAALVEEA HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TAAARSMEEQAGHLAEAVSVFKLDESAAPVAQTARVRPIASRPVAVKGAAAKPLARAAAT HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEEECCCCCCHHHHHHHH AARPATSQAALADGHWQEF HCCCCCCCHHHCCCCCCCC >Mature Secondary Structure SMQWINNLKLMPKLMLAFGIVLLIMLVQGIIAYSGLASLNNVTRDLAGNTMSSVREAGD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH LRGMLGEYRNAAYQNLVRASDSVKQEAKVRSNKLNGKIEATIKGYPRLIESPQQKKLFDV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCHHHHHHHH FVADWKKASASYASVAEMIELNLPDDAVDTFVGETRTLHNKAKDSLAALIAEDNMLAQAA HHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHH KTKAEKVHATSVSLTVMVLLIGIAGGLGLAFLFARSIVKSMRGAVTAATEIAGGKLDGQI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE NVQGQDEVGELMRSMQRMQRMQRDLKERIERDQRIADENLRIRTALDTSSTGTFITDPER EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEECCCE VMIYANDAFKKIVAQYESSIRLASPEFDASKVIGQHISYLGLSDATVRKAIAALERVGVT EEEEECHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC SFEERFGEVVLAQTVTAIKNEQCETSGEVCEWRDRTIEVQVEEEVARIVRDAASGDMSGS HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEEEEEHHHHHHHHHHHCCCCCCCC VETDGKQGFFLQLAQQLNGLLDANAGSLEHISALLSALSRGDLTVRMHGEFSGVFAQMRD CCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHC DANATAEQLADIVGHIKLSSGAINAAAGEIASGNSDLSHRTEQQAANLEETAASMEELTS CCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH TVKQNAESARQANQLAIGATGVASQGGEVVSQVVTTMSGIEASSRKIADIISVIDGIAFQ HHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHH TNILALNAAVEATRAGEQGRGFAVVASEVRTLAQRSAGAAKEIKGLIDDSVHKVAEGSAL HHHEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHH VRKAGATMAEIVASVQRVTDIMGEISAASQEQSSGIEQVNQTITQMDETTQQNAALVEEA HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TAAARSMEEQAGHLAEAVSVFKLDESAAPVAQTARVRPIASRPVAVKGAAAKPLARAAAT HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEEECCCCCCHHHHHHHH AARPATSQAALADGHWQEF HCCCCCCCHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 6302843; 11677609; 1660187; 8486661; 8831788 [H]