Click here to switch to the map view.

The map label for this gene is tse [H]

Identifier: 84624353

GI number: 84624353

Start: 3030282

End: 3030968

Strand: Direct

Name: tse [H]

Synonym: XOO_2696

Alternate gene names: 84624353

Gene position: 3030282-3030968 (Clockwise)

Preceding gene: 84624352

Following gene: 84624354

Centisome position: 61.34

GC content: 63.76

Gene sequence:

>687_bases
GTGAGCCAGGTCGTGGACACCATGTCCGGTATCCAGACCTCGTCCAAGAAGATCGCCGAAATCATCAGCGTCATCGATGG
CATCGCCTTCCAGAGCAATATTTTGGCGTTGAATGCAGCGGTGGAAGCCGCGCGTGCCGGCGAACAGGGCCGTGGCTTTG
CCGTGGTGGCCTCGGAAGAGCGTACGCTGGCGCAGCGCTCTGCCAGTGCAGCCAAAGAGATCAAGCACCTCATCGACGAC
TCGGGCGGCAAGGTCGCTCAAGGCTCGGCATTGGTGGATCAGGCCGGCAAGACCATGGCCGGGATCGTCTCCTCGGTGCA
GCGCGTCACCGACATCATGGGCGCGATTTCCACCGCCTCGCAGGAGCAGTCCAGCGGCATCGAGCAGGTCAACCTCACCG
TGACGCAGATGGATGAAACCACCCAGCAAAACGCCGCGCTGGTGGAAGAAGCCACGGCTGCGGCGCGTGCGATGGAAGAA
CAGGCCAGCCAGCTGACCGAGGCGGTGGCAGTCTTCAAGCTTAGCCACGCCGTCAGACCCGTGTTGGCTACAGCGACCGC
GAAAAAACCAGCGGTGCGTACAGCGTCCACCGCCAAGCCCGTGCCTGCCAGCGGCAAGCGCGTGGCGACACCGCTGCGCC
ACCCCGCAAGCAAGCCGTCTGGCACTGCAGGTAACGACAGCCAGTGA

Upstream 100 bases:

>100_bases
GAACGCACGTCCACCGTTAAACAACACGCCGAAAGCGCGCGTCAGGCCAATCAGCTGGCGATCGGCGCAGCCAGCGTCGC
TTCGCAACGGGGGCCACGTG

Downstream 100 bases:

>100_bases
CAGGATTTCTGGTCGCCGTGCACTGAGCGACCTGCAAGCGGACACAAGCGCAATCGGGTGATATGCAGCGTTATTCGGAC
TCCATCCCTGCATTCCCGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MSQVVDTMSGIQTSSKKIAEIISVIDGIAFQSNILALNAAVEAARAGEQGRGFAVVASEERTLAQRSASAAKEIKHLIDD
SGGKVAQGSALVDQAGKTMAGIVSSVQRVTDIMGAISTASQEQSSGIEQVNLTVTQMDETTQQNAALVEEATAAARAMEE
QASQLTEAVAVFKLSHAVRPVLATATAKKPAVRTASTAKPVPASGKRVATPLRHPASKPSGTAGNDSQ

Sequences:

>Translated_228_residues
MSQVVDTMSGIQTSSKKIAEIISVIDGIAFQSNILALNAAVEAARAGEQGRGFAVVASEERTLAQRSASAAKEIKHLIDD
SGGKVAQGSALVDQAGKTMAGIVSSVQRVTDIMGAISTASQEQSSGIEQVNLTVTQMDETTQQNAALVEEATAAARAMEE
QASQLTEAVAVFKLSHAVRPVLATATAKKPAVRTASTAKPVPASGKRVATPLRHPASKPSGTAGNDSQ
>Mature_227_residues
SQVVDTMSGIQTSSKKIAEIISVIDGIAFQSNILALNAAVEAARAGEQGRGFAVVASEERTLAQRSASAAKEIKHLIDDS
GGKVAQGSALVDQAGKTMAGIVSSVQRVTDIMGAISTASQEQSSGIEQVNLTVTQMDETTQQNAALVEEATAAARAMEEQ
ASQLTEAVAVFKLSHAVRPVLATATAKKPAVRTASTAKPVPASGKRVATPLRHPASKPSGTAGNDSQ

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI2367378, Length=191, Percent_Identity=69.1099476439791, Blast_Score=210, Evalue=7e-56,
Organism=Escherichia coli, GI1788194, Length=174, Percent_Identity=65.5172413793103, Blast_Score=207, Evalue=4e-55,
Organism=Escherichia coli, GI1788195, Length=172, Percent_Identity=69.7674418604651, Blast_Score=203, Evalue=6e-54,
Organism=Escherichia coli, GI1787690, Length=179, Percent_Identity=64.804469273743, Blast_Score=199, Evalue=9e-53,
Organism=Escherichia coli, GI1789453, Length=172, Percent_Identity=50, Blast_Score=155, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR003122
- InterPro:   IPR004091
- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF02203 TarH [H]

EC number: NA

Molecular weight: Translated: 23393; Mature: 23261

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVVDTMSGIQTSSKKIAEIISVIDGIAFQSNILALNAAVEAARAGEQGRGFAVVASEE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCH
RTLAQRSASAAKEIKHLIDDSGGKVAQGSALVDQAGKTMAGIVSSVQRVTDIMGAISTAS
HHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
QEQSSGIEQVNLTVTQMDETTQQNAALVEEATAAARAMEEQASQLTEAVAVFKLSHAVRP
HHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLATATAKKPAVRTASTAKPVPASGKRVATPLRHPASKPSGTAGNDSQ
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SQVVDTMSGIQTSSKKIAEIISVIDGIAFQSNILALNAAVEAARAGEQGRGFAVVASEE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCH
RTLAQRSASAAKEIKHLIDDSGGKVAQGSALVDQAGKTMAGIVSSVQRVTDIMGAISTAS
HHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
QEQSSGIEQVNLTVTQMDETTQQNAALVEEATAAARAMEEQASQLTEAVAVFKLSHAVRP
HHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLATATAKKPAVRTASTAKPVPASGKRVATPLRHPASKPSGTAGNDSQ
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2496104 [H]