| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is gluQ
Identifier: 84624229
GI number: 84624229
Start: 2866450
End: 2867349
Strand: Direct
Name: gluQ
Synonym: XOO_2572
Alternate gene names: 84624229
Gene position: 2866450-2867349 (Clockwise)
Preceding gene: 84624227
Following gene: 84624230
Centisome position: 58.02
GC content: 71.33
Gene sequence:
>900_bases ATGCCATCGCCCTCCTATCTCGGCCGCTTCGCGCCCTCGCCTACCGGCCCGCTGCACTTCGGCTCCCTGCTCGCTGCGTT CGGCAGCTGGCTGCTCGCCCGGCATGCCGGCGGACAATGGTGCGTCCGCATCGAAGACATCGACCCGCCGCGCGCCGAAC CCGGCGCTTCCGAACGGCAACTACGCACCCTGACCGCCTTCGGGCTGCACTCGGATCTTCCCGTGATCCGGCAGTCCGAG CGCGACGCCGCCTACACTGCCGCCATCAACCGGCTGCTGGAGACCGGCCAGGCATTCGAGTGCAGCTGCAGCCGCGCAGA CCTGGCCGGCATGGGCGGTATCCACCATGCCTGCGTCGCGCCACTCGGCGCGCGCCGTGCGGTGCGCCTGCGGGTGCCGC CGCAATCGCCGGTCGGCTTCGACGACGCGCTGCACGGCCGCGTGCTGCAGGATGTCTACGCAGATGTGGGCGATGTGGTG CTGCGCCGCGCCGATGGCTACTGGGCTTACCAACTGGCGGTGGTGGTGGACGATGCGGCGCAGGGCATCACCGATGTGGT GCGCGGCGCCGACCTGCTCGACTCCACTCCGCGCCAGATGCTGCTGCAGCGCGCACTGGGCGTGCCGCAGCCGCGTTACC TGCATCTGCCACTGATGCTGGATGGCGATGGCCGCAAGCTGTCCAAATCGCACGGCGCACCCGCGCTGGACGATACCGAC CCACTGCCGGCCCTGCACGCCGCCTGGGCCGGGCTGGGCCAGCGCCCGGACGCGCTGCCGCGGCGCGCGACGGTCACGAC CCTGCTGCAGCAGGCCGTGCGGCATTTTTCGCCGCAGTTGCTGCCGCGCCAACGCCAGCGGGACCGCGCTACCTGCGCAT ACGAGCGCCAGCGTGACTAG
Upstream 100 bases:
>100_bases CATGGCGCGATGGCTCCACGGATGCGGGGTGAACTGTTGCGGATCTGCGGGTGCGGCGGCTTGAAATCAAGCGAGCAGCT GACCGACGATTCAGCTGCCC
Downstream 100 bases:
>100_bases AATTGCGCCCCAGCACCGGCATCCAGGCGTGGCCGCGCCGGCACGCTCCTGGATCGCCCTCAGCCTTACTTGTTGATTGG AGTCGTCATGACATCTCGCG
Product: aminoacyl-tRNA synthetase:glutamyl-like protein
Products: NA
Alternate protein names: Glu-Q-RSs
Number of amino acids: Translated: 299; Mature: 298
Protein sequence:
>299_residues MPSPSYLGRFAPSPTGPLHFGSLLAAFGSWLLARHAGGQWCVRIEDIDPPRAEPGASERQLRTLTAFGLHSDLPVIRQSE RDAAYTAAINRLLETGQAFECSCSRADLAGMGGIHHACVAPLGARRAVRLRVPPQSPVGFDDALHGRVLQDVYADVGDVV LRRADGYWAYQLAVVVDDAAQGITDVVRGADLLDSTPRQMLLQRALGVPQPRYLHLPLMLDGDGRKLSKSHGAPALDDTD PLPALHAAWAGLGQRPDALPRRATVTTLLQQAVRHFSPQLLPRQRQRDRATCAYERQRD
Sequences:
>Translated_299_residues MPSPSYLGRFAPSPTGPLHFGSLLAAFGSWLLARHAGGQWCVRIEDIDPPRAEPGASERQLRTLTAFGLHSDLPVIRQSE RDAAYTAAINRLLETGQAFECSCSRADLAGMGGIHHACVAPLGARRAVRLRVPPQSPVGFDDALHGRVLQDVYADVGDVV LRRADGYWAYQLAVVVDDAAQGITDVVRGADLLDSTPRQMLLQRALGVPQPRYLHLPLMLDGDGRKLSKSHGAPALDDTD PLPALHAAWAGLGQRPDALPRRATVTTLLQQAVRHFSPQLLPRQRQRDRATCAYERQRD >Mature_298_residues PSPSYLGRFAPSPTGPLHFGSLLAAFGSWLLARHAGGQWCVRIEDIDPPRAEPGASERQLRTLTAFGLHSDLPVIRQSER DAAYTAAINRLLETGQAFECSCSRADLAGMGGIHHACVAPLGARRAVRLRVPPQSPVGFDDALHGRVLQDVYADVGDVVL RRADGYWAYQLAVVVDDAAQGITDVVRGADLLDSTPRQMLLQRALGVPQPRYLHLPLMLDGDGRKLSKSHGAPALDDTDP LPALHAAWAGLGQRPDALPRRATVTTLLQQAVRHFSPQLLPRQRQRDRATCAYERQRD
Specific function: Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble positi
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily
Homologues:
Organism=Homo sapiens, GI134288884, Length=257, Percent_Identity=36.5758754863813, Blast_Score=130, Evalue=2e-30, Organism=Escherichia coli, GI226510925, Length=286, Percent_Identity=47.2027972027972, Blast_Score=231, Evalue=4e-62, Organism=Escherichia coli, GI1788743, Length=247, Percent_Identity=36.8421052631579, Blast_Score=155, Evalue=3e-39, Organism=Caenorhabditis elegans, GI71993394, Length=249, Percent_Identity=32.9317269076305, Blast_Score=125, Evalue=2e-29, Organism=Saccharomyces cerevisiae, GI6324540, Length=264, Percent_Identity=35.6060606060606, Blast_Score=149, Evalue=5e-37, Organism=Drosophila melanogaster, GI24665321, Length=252, Percent_Identity=36.5079365079365, Blast_Score=145, Evalue=3e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): GLUQ_XANOR (Q5GZ90)
Other databases:
- EMBL: AE013598 - RefSeq: YP_201366.1 - ProteinModelPortal: Q5GZ90 - SMR: Q5GZ90 - GeneID: 3262015 - GenomeReviews: AE013598_GR - KEGG: xoo:XOO2727 - NMPDR: fig|291331.3.peg.2849 - HOGENOM: HBG628189 - OMA: DWPRDPD - ProtClustDB: PRK05710 - BioCyc: XORY291331:XOO2727-MONOMER - GO: GO:0005737 - GO: GO:0006412 - HAMAP: MF_01428 - InterPro: IPR022380 - InterPro: IPR000924 - InterPro: IPR020058 - InterPro: IPR014729 - Gene3D: G3DSA:3.40.50.620 - PANTHER: PTHR10119 - PRINTS: PR00987 - TIGRFAMs: TIGR03838
Pfam domain/function: PF00749 tRNA-synt_1c
EC number: NA
Molecular weight: Translated: 32599; Mature: 32468
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: BINDING 45-45 BINDING 170-170 BINDING 188-188 BINDING 229-229
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSPSYLGRFAPSPTGPLHFGSLLAAFGSWLLARHAGGQWCVRIEDIDPPRAEPGASERQ CCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHH LRTLTAFGLHSDLPVIRQSERDAAYTAAINRLLETGQAFECSCSRADLAGMGGIHHACVA HHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHCCCCHHHHHHC PLGARRAVRLRVPPQSPVGFDDALHGRVLQDVYADVGDVVLRRADGYWAYQLAVVVDDAA CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECHHH QGITDVVRGADLLDSTPRQMLLQRALGVPQPRYLHLPLMLDGDGRKLSKSHGAPALDDTD HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHCCCCCCCCCCC PLPALHAAWAGLGQRPDALPRRATVTTLLQQAVRHFSPQLLPRQRQRDRATCAYERQRD CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PSPSYLGRFAPSPTGPLHFGSLLAAFGSWLLARHAGGQWCVRIEDIDPPRAEPGASERQ CCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHH LRTLTAFGLHSDLPVIRQSERDAAYTAAINRLLETGQAFECSCSRADLAGMGGIHHACVA HHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHCCCCHHHHHHC PLGARRAVRLRVPPQSPVGFDDALHGRVLQDVYADVGDVVLRRADGYWAYQLAVVVDDAA CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECHHH QGITDVVRGADLLDSTPRQMLLQRALGVPQPRYLHLPLMLDGDGRKLSKSHGAPALDDTD HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHCCCCCCCCCCC PLPALHAAWAGLGQRPDALPRRATVTTLLQQAVRHFSPQLLPRQRQRDRATCAYERQRD CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA