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The map label for this gene is cydA [H]

Identifier: 84624163

GI number: 84624163

Start: 2798070

End: 2798771

Strand: Direct

Name: cydA [H]

Synonym: XOO_2506

Alternate gene names: 84624163

Gene position: 2798070-2798771 (Clockwise)

Preceding gene: 84624162

Following gene: 84624164

Centisome position: 56.64

GC content: 61.97

Gene sequence:

>702_bases
TTGGTTACCACCTGGCTGGTGGCGTTGGGCAGCAACTTCTCGGCGTCGTGGATCCTGATCGCCAACGGCTGGATGCAGAA
TCCGGCCGGTGCTGTCTTCAACCCGGACACCATGCGCATGGACGTGGAGGATTTTGTGGCAGTGCTGTTCAACCCAGTGG
CGCAAGCCAAGTTCGTGCACACCGTCAACGCCGGCTACGTGCTGGACGCGGTGTTCGTGATGTCGACCCGTGCGTTTTAC
CTGTTGCGCGGCAAGCATAGTGACATGGCACGGCGCTCGTTCGCGGTGGCTGCGGCGTTCGGTCTGCTGTCGTCGTTGTC
GGAGGTGGTGCTGGGCGACCAAAGCGGCTACGCCGCCAGCGAACACCAGAAAATGAAACTGGCGGCGATCGAAGCGATGT
GGGAAACCGAAGCTGCACCGGCCGACTTCACTGCGTTCGGCATCCCGAACCAGACCACCCATCGCAACGATTACGCCATC
AAGATTCCGTACCTGATGGGACTGGTCGCTACGGGTTCGCTGGATGAGCCGATCCCGGGAATTGCCAAATTGGTCGGCCG
TGCCGAACACCGCATCCGCGGCGGCCAGATCGCCTACGGCGCACTGCAACGTATTCGCGCCGAGAAGAACGATGCCGAAG
CGCGCATGGTCTTCGATGCGCATTGGCCGGATCTGGGCCACGGCCTGCTGCTGAAGCGCTAG

Upstream 100 bases:

>100_bases
GAAGTCTTCTCCGAGGAGGTCCTCAACAGCGTTGCGAATCAGAGTTGAATTCGCCCCCCGCTGGAATCGCCTCTGGAATC
GCCTGAGTAAAGTGCAGCAC

Downstream 100 bases:

>100_bases
CGCGACGATATCGGCAATGCCACGCCGGCGCAGATTGCCCAGGCCGCGATGGACACCGTGCCGCGCGTACTGCCGCTGTT
CTGGACCCTCCGCATCATGG

Product: truncated cytochrome D ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MVTTWLVALGSNFSASWILIANGWMQNPAGAVFNPDTMRMDVEDFVAVLFNPVAQAKFVHTVNAGYVLDAVFVMSTRAFY
LLRGKHSDMARRSFAVAAAFGLLSSLSEVVLGDQSGYAASEHQKMKLAAIEAMWETEAAPADFTAFGIPNQTTHRNDYAI
KIPYLMGLVATGSLDEPIPGIAKLVGRAEHRIRGGQIAYGALQRIRAEKNDAEARMVFDAHWPDLGHGLLLKR

Sequences:

>Translated_233_residues
MVTTWLVALGSNFSASWILIANGWMQNPAGAVFNPDTMRMDVEDFVAVLFNPVAQAKFVHTVNAGYVLDAVFVMSTRAFY
LLRGKHSDMARRSFAVAAAFGLLSSLSEVVLGDQSGYAASEHQKMKLAAIEAMWETEAAPADFTAFGIPNQTTHRNDYAI
KIPYLMGLVATGSLDEPIPGIAKLVGRAEHRIRGGQIAYGALQRIRAEKNDAEARMVFDAHWPDLGHGLLLKR
>Mature_233_residues
MVTTWLVALGSNFSASWILIANGWMQNPAGAVFNPDTMRMDVEDFVAVLFNPVAQAKFVHTVNAGYVLDAVFVMSTRAFY
LLRGKHSDMARRSFAVAAAFGLLSSLSEVVLGDQSGYAASEHQKMKLAAIEAMWETEAAPADFTAFGIPNQTTHRNDYAI
KIPYLMGLVATGSLDEPIPGIAKLVGRAEHRIRGGQIAYGALQRIRAEKNDAEARMVFDAHWPDLGHGLLLKR

Specific function: May be involved in maintaining the low intracellular oxygen concentration required for nitrogen fixation [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=233, Percent_Identity=53.6480686695279, Blast_Score=262, Evalue=2e-71,
Organism=Escherichia coli, GI1787212, Length=233, Percent_Identity=47.2103004291845, Blast_Score=227, Evalue=6e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 25469; Mature: 25469

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTTWLVALGSNFSASWILIANGWMQNPAGAVFNPDTMRMDVEDFVAVLFNPVAQAKFVH
CCEEEEEEECCCCCCEEEEEECCCCCCCCCCEECCCCEEECHHHHHHHHHHHHHHHEEEE
TVNAGYVLDAVFVMSTRAFYLLRGKHSDMARRSFAVAAAFGLLSSLSEVVLGDQSGYAAS
ECCCCHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
EHQKMKLAAIEAMWETEAAPADFTAFGIPNQTTHRNDYAIKIPYLMGLVATGSLDEPIPG
HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCHH
IAKLVGRAEHRIRGGQIAYGALQRIRAEKNDAEARMVFDAHWPDLGHGLLLKR
HHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEECC
>Mature Secondary Structure
MVTTWLVALGSNFSASWILIANGWMQNPAGAVFNPDTMRMDVEDFVAVLFNPVAQAKFVH
CCEEEEEEECCCCCCEEEEEECCCCCCCCCCEECCCCEEECHHHHHHHHHHHHHHHEEEE
TVNAGYVLDAVFVMSTRAFYLLRGKHSDMARRSFAVAAAFGLLSSLSEVVLGDQSGYAAS
ECCCCHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
EHQKMKLAAIEAMWETEAAPADFTAFGIPNQTTHRNDYAIKIPYLMGLVATGSLDEPIPG
HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCHH
IAKLVGRAEHRIRGGQIAYGALQRIRAEKNDAEARMVFDAHWPDLGHGLLLKR
HHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1655703; 1660468; 2170336 [H]