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The map label for this gene is yciR [C]

Identifier: 84624132

GI number: 84624132

Start: 2751660

End: 2753750

Strand: Direct

Name: yciR [C]

Synonym: XOO_2475

Alternate gene names: 84624132

Gene position: 2751660-2753750 (Clockwise)

Preceding gene: 84624131

Following gene: 84624133

Centisome position: 55.7

GC content: 65.71

Gene sequence:

>2091_bases
GTGGTCGGAACCTACAACCTTGGCATGGTGATGCTGTCACTGGTGGTGGCCGTGTTGGCCTTCTATACCGCGCTGCCGCT
AGTCGCATGGATGACTGCCAGCCGTGTCGGCTTCGCAGCCGCGTGGCTGTCCGGCGGCGCCATTGCCATGGGTATTGGCA
TCTGGTCGATGCACTTCATCGGCATGCTGGCGTTCCGCCTGCCGATTCCGGTGGGCTATGACCTGGCGTTGACGGTCTAT
TCGATGCTCGTGGCGATTCTGACCTCCGCGCTAGCGCTCTGGTTGACCTCACGCGCGGATTTGTCCGTGCCACGGCTGGG
CCTGGGTGCGCTGCTGATGGGGCTGGTCATTGCGCTGATGCATTACATGGGCATGGGCGCGCTGTGCATGGTCAAGGCGA
TCAGCTATGACCCACTGCTGTTCGGGCTCTCGATCGCCATCGCCATCGCCATCGTCGCCTCTGCCGCTGCGTTATGGATC
GTCTTCCGGCTGCGCCACGACGGGCATCGCTACAGTCTGCGCATGATCGCCGCCGTGATCATGGGCGTGGCGATCGTGGG
CATGCATTACACCGACATGGCCGCCGCGCGGTTCGCACCCGGCAGTTTGTGTGGAGTCGAGGCCGATACGCAGCTGCCAT
TGTCGTGGCTGGCGGCAGTGGTGCTGGTGACCCTGGCCTTGCTGATACTGGCGCTGGTCATTTCGGTGCTGTCGCGCCGT
TTTCAGCAGCGTACCGACGTGCTGATGCAATCGCTGGCCAAGGCCAATGCTGACCTGACCCTGGCGGCGCTACACGATCC
ACTCACCCGACTGCCCAACCGCGTGCTGCTGCACGAGCATCTCCTGCAGAACATCGAACGCGCCCAGCGCCAGGGGCAGC
GCTTTGCGGTGATGCTGATCAACCTGGACGGCTTCAAGGTGATCAACGACGGCTACGGCCATCAGCTGGGCGACCGCCTG
CTGGTGGTGGTGGCCGAACGTTTGAACGCGCATCGGCGCGCGCATGGCAGCCTGGCACGGCTGGGTGCGGACGAGTTCGT
GCTGGTGGCCGACATTGCAGACCCGGGAGATGCCGCCGCACTCGCCGCGCATCTGGTGCAGGCACTGGCGGTGCCGTTCA
TGGTTTCCAACCACGAGTTGCGTCTGAGCAGCAGCCTTGGCATCGCACAGTACCCGGAAGACGCCACCAGCGGTCCCCAG
CTCCTGACGCATGCCGACGCGGCGATGAACCACGCCAAGCACGCGGGCCGCAACCGCTACAGCTTTTTCGAACGCTCGAT
GACGGCCACCACCCGCGAACGCCTGCAGTTGCTGCACGAACTGCCGCGCGCGCTGGAGCTGGGCCAGTTCGTGCTGCATT
ACCAGCCCAAATACTGCGCCGAGGACGGCCGCCCGATCGGCGCCGAAGCGCTGATCCGCTGGCAGCATCCCGAACGCGGC
CTGGTGCCGCCGGACAGCTTCATCCCGCTGGCCGAACGCAGCGGCATGATCGGCCTGCTCGGCAGCTGGGTGCTGCGGCA
GGCCTGCCGCCAGATGCACGACTGGCGCGCGGCCGGGCACGGCGACTGGCGGGTGGCGGTCAATCTGTCGGCGATCCAGC
TGGCCTCGCCCAGCTTGCTGGACGAAGTGGCCACCACGCTCAGCGAGTTCATGCTGGCACCGGGCCAGCTCACCCTGGAA
ATCACCGAAACCATGGCCATGCGCGATGCCGAGGCCTGCCTGCGCACCCTCGGACAGCTCAACGCACTGGGCGTGCGCAT
CGCCATCGACGACTTCGGCACCGGCTATTCCAACCTGCTTTATCTGCGCAAGCTGCCGGCGCACGAGCTCAAGATCGACC
GCAGTTTTGTGCAGGCCATGGACAGCAGTGCCGAAGACATCGCCATCGTGGCCGCCGTGGTGGCACTGGCCCACACCATG
CGTCTGCAGGTAGTCGCCGAAGGCGTGGAAACCATCGCCCAGCGCAACACCCTGGAACGGCTGGGCTGCGACCAACTGCA
AGGCTATCTGCTGGGCCGCCCGATGGACGCCGAACGCTTCATCGCCACCGTGGTCGCCCAGCGCAACGGCCCGCGCCGCC
TGGCTCGCTGA

Upstream 100 bases:

>100_bases
CGCACCATTGATGACATTGGTCGCTCCCCTGCACTCAAGAAGTCGCGCGAGGGGTCGCTAGGTCTTGGGCAACGCGTCTT
TCGACGTGGGAACTGGATAG

Downstream 100 bases:

>100_bases
GCTGCAAACGGCGTCGAACGAACGCCCACCCGGCCTCCACGCTCAACGACGCCCTGGCCGGGCCGAGCAGCGATCTGGAC
CGCCGTGGAAACCTGCCAGC

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 696; Mature: 696

Protein sequence:

>696_residues
MVGTYNLGMVMLSLVVAVLAFYTALPLVAWMTASRVGFAAAWLSGGAIAMGIGIWSMHFIGMLAFRLPIPVGYDLALTVY
SMLVAILTSALALWLTSRADLSVPRLGLGALLMGLVIALMHYMGMGALCMVKAISYDPLLFGLSIAIAIAIVASAAALWI
VFRLRHDGHRYSLRMIAAVIMGVAIVGMHYTDMAAARFAPGSLCGVEADTQLPLSWLAAVVLVTLALLILALVISVLSRR
FQQRTDVLMQSLAKANADLTLAALHDPLTRLPNRVLLHEHLLQNIERAQRQGQRFAVMLINLDGFKVINDGYGHQLGDRL
LVVVAERLNAHRRAHGSLARLGADEFVLVADIADPGDAAALAAHLVQALAVPFMVSNHELRLSSSLGIAQYPEDATSGPQ
LLTHADAAMNHAKHAGRNRYSFFERSMTATTRERLQLLHELPRALELGQFVLHYQPKYCAEDGRPIGAEALIRWQHPERG
LVPPDSFIPLAERSGMIGLLGSWVLRQACRQMHDWRAAGHGDWRVAVNLSAIQLASPSLLDEVATTLSEFMLAPGQLTLE
ITETMAMRDAEACLRTLGQLNALGVRIAIDDFGTGYSNLLYLRKLPAHELKIDRSFVQAMDSSAEDIAIVAAVVALAHTM
RLQVVAEGVETIAQRNTLERLGCDQLQGYLLGRPMDAERFIATVVAQRNGPRRLAR

Sequences:

>Translated_696_residues
MVGTYNLGMVMLSLVVAVLAFYTALPLVAWMTASRVGFAAAWLSGGAIAMGIGIWSMHFIGMLAFRLPIPVGYDLALTVY
SMLVAILTSALALWLTSRADLSVPRLGLGALLMGLVIALMHYMGMGALCMVKAISYDPLLFGLSIAIAIAIVASAAALWI
VFRLRHDGHRYSLRMIAAVIMGVAIVGMHYTDMAAARFAPGSLCGVEADTQLPLSWLAAVVLVTLALLILALVISVLSRR
FQQRTDVLMQSLAKANADLTLAALHDPLTRLPNRVLLHEHLLQNIERAQRQGQRFAVMLINLDGFKVINDGYGHQLGDRL
LVVVAERLNAHRRAHGSLARLGADEFVLVADIADPGDAAALAAHLVQALAVPFMVSNHELRLSSSLGIAQYPEDATSGPQ
LLTHADAAMNHAKHAGRNRYSFFERSMTATTRERLQLLHELPRALELGQFVLHYQPKYCAEDGRPIGAEALIRWQHPERG
LVPPDSFIPLAERSGMIGLLGSWVLRQACRQMHDWRAAGHGDWRVAVNLSAIQLASPSLLDEVATTLSEFMLAPGQLTLE
ITETMAMRDAEACLRTLGQLNALGVRIAIDDFGTGYSNLLYLRKLPAHELKIDRSFVQAMDSSAEDIAIVAAVVALAHTM
RLQVVAEGVETIAQRNTLERLGCDQLQGYLLGRPMDAERFIATVVAQRNGPRRLAR
>Mature_696_residues
MVGTYNLGMVMLSLVVAVLAFYTALPLVAWMTASRVGFAAAWLSGGAIAMGIGIWSMHFIGMLAFRLPIPVGYDLALTVY
SMLVAILTSALALWLTSRADLSVPRLGLGALLMGLVIALMHYMGMGALCMVKAISYDPLLFGLSIAIAIAIVASAAALWI
VFRLRHDGHRYSLRMIAAVIMGVAIVGMHYTDMAAARFAPGSLCGVEADTQLPLSWLAAVVLVTLALLILALVISVLSRR
FQQRTDVLMQSLAKANADLTLAALHDPLTRLPNRVLLHEHLLQNIERAQRQGQRFAVMLINLDGFKVINDGYGHQLGDRL
LVVVAERLNAHRRAHGSLARLGADEFVLVADIADPGDAAALAAHLVQALAVPFMVSNHELRLSSSLGIAQYPEDATSGPQ
LLTHADAAMNHAKHAGRNRYSFFERSMTATTRERLQLLHELPRALELGQFVLHYQPKYCAEDGRPIGAEALIRWQHPERG
LVPPDSFIPLAERSGMIGLLGSWVLRQACRQMHDWRAAGHGDWRVAVNLSAIQLASPSLLDEVATTLSEFMLAPGQLTLE
ITETMAMRDAEACLRTLGQLNALGVRIAIDDFGTGYSNLLYLRKLPAHELKIDRSFVQAMDSSAEDIAIVAAVVALAHTM
RLQVVAEGVETIAQRNTLERLGCDQLQGYLLGRPMDAERFIATVVAQRNGPRRLAR

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=427, Percent_Identity=37.2365339578454, Blast_Score=267, Evalue=2e-72,
Organism=Escherichia coli, GI87081921, Length=414, Percent_Identity=35.5072463768116, Blast_Score=247, Evalue=2e-66,
Organism=Escherichia coli, GI226510982, Length=459, Percent_Identity=30.718954248366, Blast_Score=213, Evalue=3e-56,
Organism=Escherichia coli, GI1790496, Length=287, Percent_Identity=33.7979094076655, Blast_Score=156, Evalue=5e-39,
Organism=Escherichia coli, GI87081845, Length=266, Percent_Identity=34.2105263157895, Blast_Score=151, Evalue=2e-37,
Organism=Escherichia coli, GI1786507, Length=321, Percent_Identity=31.7757009345794, Blast_Score=145, Evalue=7e-36,
Organism=Escherichia coli, GI1787055, Length=259, Percent_Identity=34.7490347490347, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI87081743, Length=243, Percent_Identity=33.3333333333333, Blast_Score=142, Evalue=1e-34,
Organism=Escherichia coli, GI1788849, Length=243, Percent_Identity=34.5679012345679, Blast_Score=139, Evalue=5e-34,
Organism=Escherichia coli, GI1788502, Length=248, Percent_Identity=33.8709677419355, Blast_Score=139, Evalue=5e-34,
Organism=Escherichia coli, GI87082096, Length=491, Percent_Identity=27.4949083503055, Blast_Score=139, Evalue=6e-34,
Organism=Escherichia coli, GI87081980, Length=264, Percent_Identity=34.0909090909091, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI87081977, Length=214, Percent_Identity=30.8411214953271, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI1788381, Length=424, Percent_Identity=24.2924528301887, Blast_Score=90, Evalue=6e-19,
Organism=Escherichia coli, GI1787802, Length=179, Percent_Identity=31.8435754189944, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1788956, Length=167, Percent_Identity=35.9281437125749, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI87082007, Length=201, Percent_Identity=35.3233830845771, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=30.9090909090909, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI1786584, Length=208, Percent_Identity=26.4423076923077, Blast_Score=76, Evalue=8e-15,
Organism=Escherichia coli, GI1787816, Length=179, Percent_Identity=29.608938547486, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=30.4878048780488, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787410, Length=156, Percent_Identity=28.8461538461538, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI87081881, Length=165, Percent_Identity=34.5454545454545, Blast_Score=67, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 75794; Mature: 75794

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: PS50924 MHYT ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure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CCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]